Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 204 / 2e-62 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 200 / 6e-61 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 191 / 2e-58 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G57390 125 / 5e-32 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT3G20840 124 / 7e-32 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 124 / 9e-32 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 123 / 2e-31 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 120 / 4e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G79700 117 / 1e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT4G37750 120 / 2e-30 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018124 [exp] 200 / 2e-60 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 195 / 3e-59 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 196 / 5e-59 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 196 / 7e-59 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 197 / 8e-59 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 196 / 2e-58 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 190 / 6e-58 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 194 / 1e-57 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10015055 [exp] 190 / 1e-56 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045300 [exp] 208 / 2e-63 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 202 / 3e-61 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 200 / 1e-60 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.005G140700 [exp] 197 / 2e-59 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.007G046200 [exp] 198 / 3e-59 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 172 / 7e-50 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.003G185300 [exp] 128 / 2e-34 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 128 / 4e-34 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.001G041500 [exp] 126 / 2e-33 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.010G092800 [exp] 125 / 5e-33 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10001979 pacid=23140517 polypeptide=Lus10001979 locus=Lus10001979.g ID=Lus10001979.BGIv1.0 annot-version=v1.0 ATGGATGCTCTGGTTCCAGATCAAGACCTGCACCCGGATGTCGACCACGACGATGTTAATTCCCTTTCCGGCGCCGCAACCTCCGACTCCTCCTCTGCCG TCGCTGACGATCAGGCCTTTCCTCCAAACGACGCCGTCGCTGCCGCTTCCTCCCCTGCATTCATCTTCGACATCTTCAGGAATGAAAACGGAACCCCCGG AAAGCGCCCCACACGCCCCGCTCCCCGCCGCTCCCTCCCCGGATCTCATAGGAGTACTGAAAGGGGAATGGAAGAGCTGAATCTTGCTGCTACTGCGCCT AAGCCCTGGCTGAAGTTGTCGGATCCGTCGGCGACGGGGGGAACTTCGGCAGTGAGCGCCGGAGGGGGCCGGTGTGGGGGCGCCGCCGCCGAGGAAGAGG ACTGCGGTAAACAAGTTTACTTAGGTGGTTTCGACACCGCCCATGCTGCAGCAAGGGCATATGACCGAGCAGCAATAAAGTTCAGGGGAGTGGATGCGGA TATCAACTTTAGTTTAAATGATTACGATGAAGATATGAAACAGATGAAAGAAATGAGCAAAGAAGAATTCGTGCACGTGCTAAGGAGGCAGAGCACGGGG TTCTCACGGGGGAGCTCCAAGTACAGAGGAGTCACCCTTCACAAATGCGGCCGCTGGGAAGCCCGAATGGGCCACCTCCTTGCCAACAAGTATATTTACC TTGGATTATTCGACACCGAAGTAGAAGCTGCAAGAGCTTATGATAAGGCAGCCATGGAGTACAACGGAAACGCAGCCGTACTGACAAACTTTCAGCCAAT GCATCCCCACATTAATACTTCCAATGGTAAGGGGCAACAACAACATGTCCATGTCGATGCCATTGCTGGCAGGAGGGTTTGCAAGTTGGGGGCAGCAGCA GAATCAACAAGTAAATATTGTTGGGAATAG
AA sequence Show only first row Show all	>Lus10001979 pacid=23140517 polypeptide=Lus10001979 locus=Lus10001979.g ID=Lus10001979.BGIv1.0 annot-version=v1.0 MDALVPDQDLHPDVDHDDVNSLSGAATSDSSSAVADDQAFPPNDAVAAASSPAFIFDIFRNENGTPGKRPTRPAPRRSLPGSHRSTERGMEELNLAATAP KPWLKLSDPSATGGTSAVSAGGGRCGGAAAEEEDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFSLNDYDEDMKQMKEMSKEEFVHVLRRQSTG FSRGSSKYRGVTLHKCGRWEARMGHLLANKYIYLGLFDTEVEAARAYDKAAMEYNGNAAVLTNFQPMHPHINTSNGKGQQQHVHVDAIAGRRVCKLGAAA ESTSKYCWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	1.7	0.9023
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	4.0	0.8013
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	4.0	0.8896
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	4.2	0.8268
					Lus10008674 [exp]	5.2	0.8827
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	5.5	0.8561
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	6.0	0.8824
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	12.4	0.8423
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	15.7	0.8448
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	17.0	0.8312

Compare expression of checked genes

Lus10001979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.