Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32390 555 / 0 Nucleotide-sugar transporter family protein (.1) AT5G25400 549 / 0 Nucleotide-sugar transporter family protein (.1) AT2G25520 548 / 0 Drug/metabolite transporter superfamily protein (.1) AT5G11230 535 / 0 Nucleotide-sugar transporter family protein (.1) AT3G17430 270 / 2e-88 Nucleotide-sugar transporter family protein (.1) AT1G48230 255 / 1e-82 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 244 / 9e-79 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G14410 238 / 2e-76 Nucleotide/sugar transporter family protein (.1) AT5G05820 101 / 2e-24 Nucleotide-sugar transporter family protein (.1) AT3G11320 101 / 2e-24 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002904 [exp] 623 / 0 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018339 [exp] 270 / 3e-88 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 258 / 3e-83 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 221 / 3e-69 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10009878 [exp] 102 / 1e-24 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 100 / 7e-24 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 98 / 4e-23 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 98 / 6e-23 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 97 / 2e-22 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028900 [exp] 578 / 0 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 566 / 0 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 271 / 8e-89 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 271 / 9e-89 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 248 / 5e-80 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.008G063400 [exp] 106 / 3e-26 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 105 / 8e-26 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 104 / 2e-25 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 102 / 2e-24 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 100 / 1e-23 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10002023 pacid=23166987 polypeptide=Lus10002023 locus=Lus10002023.g ID=Lus10002023.BGIv1.0 annot-version=v1.0 ATGGGCAAAGGCGGATCTGTCAGCGACTCCGTCCTCAAAAAGATCTTCCTTTCCTACACCTACGTCGCAATCTGGATCTTCCTCTCCTTCACCGTAATCG TCTACAACAAGTACATCCTCGACAAGAAGATGTACAATTGGCCTTACCCAATCTCCCTAACCATGATCCACATGTCCTTCTGCGCCACTCTCGCCTTCCT CCTCATCAAGGTCTTCAAAGTCGTCGAGCCCGTCGCCATGTCCCGCGAGATGTACATCTCCTCCGTCGTCCCCATCGGCGCTCTTTACTCCCTCTCCCTC TGGCTATCCAACTCCGCCTACATCTACCTCTCTGTTTCCTTCATCCAGATGCTGAAAGCTCTGATGCCAGTCGCTGTTTACTCGATCGGTGTTGTCCTCA AGCGTGAGAGCTTCAAAACCGATACAATGGCGAATATGCTCTCGATCTCGTTTGGAGTCGCGATTGCTGCTTACGGTGAGGCTAGATTTGATGTCTGGGG AGTTTGTCTCCAGCTTGGAGCTGTAGCGTTTGAGGCGACTCGATTGGTGCTGATTCAGATCCTGTTGACGTCAAAAGGAATTACTCTGAATCCGATCACT TCTCTTTACTATGTAGCTCCTTGTTGCCTTGTGTTCCTGTTTGTGCCATGGATCTTCGTTGAGTATCCTGTTCTTAGGGAGACTTCCAGCTTCCATTTCG ATTTCGTCATATTTGGTACAAACTCGCTCTGTGCATTTGCGTTGAATCTAGCTGTGTTCTTGCTTGTGGGGAAGACGTCAGCGTTGACCATGAATGTGGC CGGTGTTGTGAAGGATTGGCTTCTGATTGCCTTCTCTTGGTCGGTGATCAAGGATACAGTGACGCCGATCAATCTGGTGGGTTATGGACTTGCCTTTCTG GGGGTTGCGTATTACAATCATGCCAAATTGCAGGCACTCAAGGCTAAGGAAGCTCAGAAGAAGACTCAACAAGCTGATGAAGAGCAAGGAAGGCTGCTGG AAGAGAGGGAAAGTGAAGGTAATGGCAAGAGAAGTGAATCCCAGAACTAA
AA sequence Show only first row Show all	>Lus10002023 pacid=23166987 polypeptide=Lus10002023 locus=Lus10002023.g ID=Lus10002023.BGIv1.0 annot-version=v1.0 MGKGGSVSDSVLKKIFLSYTYVAIWIFLSFTVIVYNKYILDKKMYNWPYPISLTMIHMSFCATLAFLLIKVFKVVEPVAMSREMYISSVVPIGALYSLSL WLSNSAYIYLSVSFIQMLKALMPVAVYSIGVVLKRESFKTDTMANMLSISFGVAIAAYGEARFDVWGVCLQLGAVAFEATRLVLIQILLTSKGITLNPIT SLYYVAPCCLVFLFVPWIFVEYPVLRETSSFHFDFVIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLVGYGLAFL GVAYYNHAKLQALKAKEAQKKTQQADEEQGRLLEERESEGNGKRSESQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	1.0	0.9505
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	2.8	0.9449
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	3.5	0.9296
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	3.5	0.9395
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	4.6	0.9272
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	4.9	0.9371
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	5.0	0.9352
AT5G64090			unknown protein		Lus10020420 [exp]	6.0	0.9217
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	7.3	0.9233
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	8.5	0.9240

Compare expression of checked genes

Lus10002023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.