Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47600 265 / 6e-87 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT1G74650 253 / 1e-82 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT3G28910 253 / 2e-82 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT5G62470 251 / 2e-81 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G08810 232 / 4e-75 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 182 / 8e-55 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 179 / 6e-53 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G02940 176 / 1e-52 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 174 / 2e-52 MYB ATMYB41 myb domain protein 41 (.1) AT3G61250 174 / 4e-52 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024218 [exp] 394 / 2e-138 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10042200 [exp] 306 / 9e-103 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10008616 [exp] 281 / 1e-92 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10015369 [exp] 246 / 8e-80 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10030677 [exp] 231 / 4e-74 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10009522 [exp] 229 / 1e-73 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 228 / 5e-73 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10005245 [exp] 214 / 1e-67 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10033003 [exp] 179 / 3e-53 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 276 / 3e-91 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G082500 [exp] 271 / 2e-89 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.019G045900 [exp] 231 / 3e-74 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.013G067500 [exp] 230 / 1e-73 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G118200 [exp] 182 / 2e-54 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.017G086300 [exp] 182 / 2e-54 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.013G148600 [exp] 179 / 2e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G157600 [exp] 177 / 4e-53 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 179 / 5e-53 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.012G140700 [exp] 174 / 2e-52 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002056 pacid=23162016 polypeptide=Lus10002056 locus=Lus10002056.g ID=Lus10002056.BGIv1.0 annot-version=v1.0 ATGGGAAGACCACCTTGCTGCGATAAAGCAGGGGTGAAGAAGGGACCGTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACACGGCC CTGGCAATTGGCGCTCCGTTCCCACCAACACCGGACTGATGAGATGCAGTAAAAGCTGCCGGCTGAGGTGGACGAACTACCTCCGACCAGGGATAAAGCG TGGTAATTTCACACAGGAAGAAGAGAAGATGATAATCCACCTCCAAGCCCTCCTCGGAAACCGGTGGGCCGCCATAGCTTCCTACCTCCCTGAAAGAACC GACAACGACATCAAGAATTACTGGAACACCCACCTCAAGAAAAAGCTCCACAACAACAACAAGGGCGGTACGACTACCGGTCATCATCATTCCACGTCAT CTTCTTCCGATTCCAACAGAGGAAAGTGGGAGAGGCGCCTCCAGACAGATATCGGTCTCGCCAAACAAGCCCTCTCCGACGCCCTCTCTCTCCACACTAA AAAACCCACCACCGCGGAGGATAAGACCAAATTACCCCTAGACAACCCTCCAAATTACGCATCCAGCGCCGACAACATAGCCAGGCTTCTCCAGAACTGG ATCAAGAAGCCGCCGTCCACGTCGACACCATCGACAATCACTCAAGCTGAGACGAAGTCGGATGTTACTCGGAACTCGGTGAGTTCGAGTAGTGGTGATG ATAACGATAATTTCGAGTTGCTGTTTGGCTTCCATAATGGCTCGCCCAACTCAGAAGGTGGGTCCCAGACGGTTGACGAGGACGGGGTAATAATGGATGA GAGGAAGCCGGTTCGTGTTGAGGATTATGGGGTTTCTCCGCCGACGCTTTCGCTGCTGGAGAAATGGCTATTTGAGGAGACTACCACGGCGGTGCCGGCG GCTAATAATGTTCACTGTGTAGACGAGCTTATGAACATCTCAACCTTGGACGGCGCCGGTTCGGCTTCTGGGTTTGGTGATGTTAGGTTTTGA
AA sequence Show only first row Show all	>Lus10002056 pacid=23162016 polypeptide=Lus10002056 locus=Lus10002056.g ID=Lus10002056.BGIv1.0 annot-version=v1.0 MGRPPCCDKAGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTQEEEKMIIHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLKKKLHNNNKGGTTTGHHHSTSSSSDSNRGKWERRLQTDIGLAKQALSDALSLHTKKPTTAEDKTKLPLDNPPNYASSADNIARLLQNW IKKPPSTSTPSTITQAETKSDVTRNSVSSSSGDDNDNFELLFGFHNGSPNSEGGSQTVDEDGVIMDERKPVRVEDYGVSPPTLSLLEKWLFEETTTAVPA ANNVHCVDELMNISTLDGAGSASGFGDVRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	0	1
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	1.0	0.9659
					Lus10021894 [exp]	2.0	0.9549
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	5.0	0.9182
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	5.3	0.9106
					Lus10017869 [exp]	5.7	0.9343
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10024101 [exp]	6.2	0.8820
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	9.5	0.8989
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	10.2	0.8914
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	10.4	0.9185
AT2G21080			unknown protein		Lus10036448 [exp]	11.0	0.8723

Compare expression of checked genes

Lus10002056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.