Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 79 / 2e-15 GRAS RGL2 RGA-like 2 (.1) AT4G08250 76 / 2e-14 GRAS GRAS family transcription factor (.1) AT5G41920 74 / 4e-14 GRAS GRAS family transcription factor (.1) AT1G66350 74 / 9e-14 GRAS RGL1 RGA-like 1 (.1) AT2G01570 72 / 4e-13 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 71 / 1e-12 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G17490 69 / 4e-12 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 67 / 2e-11 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G66770 65 / 8e-11 GRAS GRAS family transcription factor (.1) AT4G00150 64 / 2e-10 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012236 [exp] 932 / 0 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10022664 [exp] 488 / 5e-170 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10002205 [exp] 254 / 6e-78 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10040166 [exp] 242 / 2e-69 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10012237 [exp] 210 / 3e-63 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10008316 [exp] 107 / 1e-24 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 97 / 1e-21 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10027123 [exp] 79 / 2e-15 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10032882 [exp] 79 / 2e-15 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 412 / 3e-139 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.009G075500 [exp] 295 / 1e-94 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 101 / 1e-22 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 93 / 5e-20 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.007G026300 [exp] 84 / 7e-17 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.001G473200 [exp] 79 / 2e-15 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 76 / 3e-14 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.006G114200 [exp] 75 / 7e-14 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.012G020200 [exp] 74 / 9e-14 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 72 / 2e-13 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10002204 pacid=23180537 polypeptide=Lus10002204 locus=Lus10002204.g ID=Lus10002204.BGIv1.0 annot-version=v1.0 ATGACCAACTTGCAGGAAGAATTTCTGAATATTCAGCCATCTTGGCCGTTCTACAATGTGATTAATTCCCATTTCGACCATGATCAATCCTACGGTCATG ATCACTCTCCCACCGATTTCCCTCTTCCGCCGACGTCCGACGACATGGAGGATATCATGGCAGACTCGTCCTTTCACCAGTTTTCATCCATTTTAACCGA CGACGTTTCGCAACACTCCGACGACGGATTAGGGATGATGAATATGATGGTCACCTTATCCACCGACGAGCTCATGATGGGCTTGGACCAATTCGACCCT AGTTTCACCGACAGCGAAGCAAACAGTAACTACCCAAGCCCGAGCCCCATCCAGAGCCCAAGCTTGTCCAATTCGGCGATGGAGGTAGCGAATTTGAACA TACCGGGGGAGGGGAGCGAACTCGGGAACGAGATCAGCGTCTTCAACCTACTGAAAGCGTACGGGGAAGCGATGGAAGGTGACCACATGGAGCTAGCGGA GGTGATAATGGCGAGCGTGAGCGAGAAAGTAAGCCCTGCCGGAGACTCTCTGGAGCGGCTGGCATTCAACCTTTCGCAGGATCTTCGGAAAGAAGTAGAT TACATTAAGCAAGAAGCTCTCAAAAACTACGAGTCAGCTTTCAGAGCGTTCTACCAGATCTTCCCTTACGGTAGATTCGCTCATTTCGCGGCCAATTCGG CCATGGTTGAGTCAATTCCGATCGCAACCGAGTCGATCCACATTGTCGATTTCGACATTGGGGAAGGCGTCCAGTGGCCACCGGTGATCGACACTCTCTC CCGGATGAGGGGAGTCAAGTCAGTTAATCTAACGGCTGTAAACGATTGGGGAGAAATGGAATTTTCGGAGACGGAATTAGGATGCCCGGCTATGTGGAAT TTCGAAGAGGTTAAGAGACGGCTGGTGGATCATTCGAACCGGGTCGGGTTGAAAATGGAGATCCGAGGGATCCGAATCGAAGATCTCCGGGAAGAAATGG AGAGAAGGAAGAATAAGAAGATGAAGAAGTTGGAATGGTGTGTTTTCAATTGTATGGTTGGGCTTCCACACATGAGGAGAGTAAGGAGCAGGAAATTGGT TGACGAGTTTCTCGAGTTGGGTAACAAGTTGGTTAATGAGTCGGGTGGGATTGTGACTCGCGGAGAAGGTGAAGCTTGGGAGAGTTTAAACGATTGTTCA GGATTTGGATCGTTTTTTGAAGGAAACATGGAGTATTACAGGTCATTATTGGAGTCGATTGAATTGAATTTTCCGGAGTTGGCGGAGGCGAGGATGGCGC TGGAGTGTTTGTTTGTGGCGCCTTTTATATCTGCGGAGGGATGGTTCCGACGGTGGTCTGAGATGGGTGAAATTCAAGATAAAAAAGAAGGTGCGCCGAC GATGAAAAAATGGAGAGTGAGCAAAGAAAGTTCAGAAGAAGCCAAAGAAATGGTGAACGAGAGGATGACGTCGTATGGAGTTAGAATCGACGGGGAGGAA GGAGAGGAGATGGTTCTTGAGTGGAAAGGTTCGCCGTTGGTGAAAGTTTCGTCGGTGTGGAGGAACTAA
AA sequence Show only first row Show all	>Lus10002204 pacid=23180537 polypeptide=Lus10002204 locus=Lus10002204.g ID=Lus10002204.BGIv1.0 annot-version=v1.0 MTNLQEEFLNIQPSWPFYNVINSHFDHDQSYGHDHSPTDFPLPPTSDDMEDIMADSSFHQFSSILTDDVSQHSDDGLGMMNMMVTLSTDELMMGLDQFDP SFTDSEANSNYPSPSPIQSPSLSNSAMEVANLNIPGEGSELGNEISVFNLLKAYGEAMEGDHMELAEVIMASVSEKVSPAGDSLERLAFNLSQDLRKEVD YIKQEALKNYESAFRAFYQIFPYGRFAHFAANSAMVESIPIATESIHIVDFDIGEGVQWPPVIDTLSRMRGVKSVNLTAVNDWGEMEFSETELGCPAMWN FEEVKRRLVDHSNRVGLKMEIRGIRIEDLREEMERRKNKKMKKLEWCVFNCMVGLPHMRRVRSRKLVDEFLELGNKLVNESGGIVTRGEGEAWESLNDCS GFGSFFEGNMEYYRSLLESIELNFPELAEARMALECLFVAPFISAEGWFRRWSEMGEIQDKKEGAPTMKKWRVSKESSEEAKEMVNERMTSYGVRIDGEE GEEMVLEWKGSPLVKVSSVWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10002204 [exp]	0	1
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	11.4	0.7969
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	16.7	0.7665
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10011392 [exp]	20.5	0.6615
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	29.8	0.7617
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	33.3	0.7539
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	35.0	0.7650
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	44.0	0.7564
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	55.2	0.7387
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	56.9	0.7531
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	58.4	0.7329

Compare expression of checked genes

Lus10002204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.