Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50650 47 / 4e-05 GRAS SCL7 GRAS family transcription factor (.1) AT4G08250 46 / 5e-05 GRAS GRAS family transcription factor (.1) AT2G29060 43 / 0.0004 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012237 [exp] 518 / 0 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10012236 [exp] 233 / 6e-70 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10002204 [exp] 228 / 5e-68 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10022664 [exp] 127 / 1e-31 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10040166 [exp] 104 / 5e-23 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10008316 [exp] 71 / 1e-12 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 62 / 3e-10 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10035840 [exp] 49 / 1e-05 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10041721 [exp] 48 / 2e-05 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 256 / 1e-78 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.009G075500 [exp] 213 / 5e-63 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 76 / 2e-14 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.001G280332 [exp] 56 / 8e-09 ND / Potri.014G060200 [exp] 52 / 1e-06 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G409500 [exp] 48 / 2e-05 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.014G060500 [exp] 48 / 2e-05 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.007G026300 [exp] 47 / 2e-05 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.019G007100 [exp] 47 / 2e-05 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.011G131100 [exp] 47 / 4e-05 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10002205 pacid=23180529 polypeptide=Lus10002205 locus=Lus10002205.g ID=Lus10002205.BGIv1.0 annot-version=v1.0 ATGATCCAACAGAAACCATTCCAACTATCCTTCGATCATGATCAGTACCCCAATGGCAATTATCATCACGTTTCCATGGACACCCCGCCGCCGATCAACT TCTCCTCCTTCCAAACCACCGTCCCCCAATCCAACGACTGGTTCGATTACTCTGCTGCTGATGACAAACTCAGCAATTTAGCTGTCCCCGTTGACCTCCC ACCCCTCGAATTGGACGAATTCGAGCCTCTCAAGCCCGCCGAAATCGAGGATGTCACCGCATGGCTAAGCGGCAGAGGCGGCGATGGAGGATTTGGTGCG GCCGCGCAGCCGCCCCCGCCCCTGCTTCAAGCGAATAATCACAATGCTGCTGCTACGGTCTTCGTTGGAGGACAGCAGCTGACGATCCCGACGGTTGGGG TTCCGATCAATAGCCGGATGAGTGTCACTCACCTGACGAAGGCCTACGCGGAGGCGATGGAGAACAAGCAGCCGGAGCTGGCGGAGATGATCACCGGACG GATTAGCGAGAAAGTCAGCCCCACGGGGGAGATCAACGACCGATTGCTCTACTATACTTTCCAGCCGATCGACAAGCAATCGGAGTATCTTAAGCAGGAA TCAGGGAAAAATTTCGATAGAGCGCTCGAAGCTTTCTATCGAATCTTTCACTACGGGATGGTGGCGCATTTCGCCGCCAATTCCGCCATCCTTGAAACGA CATTGTCTCTAAACCCCGACGTCCTCCACATTGTCGATTTCGACATCGGGGAAGGCGTCCAGTGGCCCCCGCTAATCCTCGCCCTCGCCCAACAACAGAG ACAAATCCCTCAAATCAATCAAAACATTCAAAATTCCAATTTCTACTACGACGCCATTTTGCCAACCACGACAATGATTAAGTTAACCGCGATCAATTGG AGGAGCGAGGAGTCGTTGAATTCGAATCGGAGGAGATTCGAGTCGACGAAGAAGCAGCTTCAAGATTACGCGAGCTCGTTCGGGGTGACGATGAGGATTG AAGAGATGGAGATTCAAGAACTGAAGAGAAGTTTGAAAAAAGGAGGGAAAAGATGCTTGACGTTCAACTGTATGTGGGGGCTACCTCATATGGGCCGAAG ACGGAGCAAGGCCCAAGTTTCAGAGTTTTTAGGCCTGGCGAGAGAGCTATTGGGCCAGCCCGGACCCAACGGGTTACTAACTTTTAGTGACGGGAATGGT AATAATAATAGTGACAGCAATAATGATTGCGGATTTGGGGGGTTCTTCGAAAGCTACATGGCGCATTATAGGGCGGTGCTGGAATCGATGGAGTGGAGTT TTCCGGCGAGGCTATCGGAGGCGAGGCTGGCGATGGAGTATTTATTCGTGGCGCCGTTGATTCACTCGTCGGAGTGGGGAGGGAAGTGGGGAGAGGAGAT GGCGGAGGAAGGGAGTAAGTTGGTTTCGAGGTTAGGATTCCGGCCAGTTACGATCACCGCCGGCGCGGGGGTGGCGGGGGTGAGGGGGGGTGTTTGGGAA GGGGAGAGGGAGGGGGAGAGTCAGTACGGGGTGAGGATTGGCGGGGAGAATCAGAACGAAATGGTGCTTGAATGGAGAGGAACGCCGTTGGTTAAAGTCT CTGCTTGGAGATGA
AA sequence Show only first row Show all	>Lus10002205 pacid=23180529 polypeptide=Lus10002205 locus=Lus10002205.g ID=Lus10002205.BGIv1.0 annot-version=v1.0 MIQQKPFQLSFDHDQYPNGNYHHVSMDTPPPINFSSFQTTVPQSNDWFDYSAADDKLSNLAVPVDLPPLELDEFEPLKPAEIEDVTAWLSGRGGDGGFGA AAQPPPPLLQANNHNAAATVFVGGQQLTIPTVGVPINSRMSVTHLTKAYAEAMENKQPELAEMITGRISEKVSPTGEINDRLLYYTFQPIDKQSEYLKQE SGKNFDRALEAFYRIFHYGMVAHFAANSAILETTLSLNPDVLHIVDFDIGEGVQWPPLILALAQQQRQIPQINQNIQNSNFYYDAILPTTTMIKLTAINW RSEESLNSNRRRFESTKKQLQDYASSFGVTMRIEEMEIQELKRSLKKGGKRCLTFNCMWGLPHMGRRRSKAQVSEFLGLARELLGQPGPNGLLTFSDGNG NNNSDSNNDCGFGGFFESYMAHYRAVLESMEWSFPARLSEARLAMEYLFVAPLIHSSEWGGKWGEEMAEEGSKLVSRLGFRPVTITAGAGVAGVRGGVWE GEREGESQYGVRIGGENQNEMVLEWRGTPLVKVSAWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10002205 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10040747 [exp]	6.1	0.8222
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	9.2	0.8107
					Lus10003825 [exp]	11.2	0.8107
AT5G56990			unknown protein		Lus10029528 [exp]	13.0	0.8107
					Lus10038051 [exp]	14.5	0.8107
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	15.3	0.5895
AT5G01660			unknown protein		Lus10040599 [exp]	15.9	0.8107
					Lus10029261 [exp]	17.1	0.8107
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	18.0	0.8092
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	18.3	0.8107

Compare expression of checked genes

Lus10002205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.