Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15050 197 / 2e-59 Protein of Unknown Function (DUF239) (.1) AT1G10190 194 / 2e-58 Protein of Unknown Function (DUF239) (.1) AT2G24950 181 / 4e-53 Protein of Unknown Function (DUF239) (.1) AT4G15053 178 / 7e-52 Protein of Unknown Function (DUF239) (.1) AT4G10220 175 / 8e-51 Protein of Unknown Function (DUF239) (.1) AT4G10210 164 / 6e-47 Protein of Unknown Function (DUF239) (.1) AT5G56530 159 / 1e-44 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 159 / 2e-44 Protein of Unknown Function (DUF239) (.1) AT4G23390 156 / 7e-44 Protein of Unknown Function (DUF239) (.1) AT4G23350 155 / 4e-43 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013410 [exp] 164 / 3e-46 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042273 [exp] 143 / 1e-39 AT4G23350 104 / 2e-25 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 144 / 9e-39 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 139 / 1e-37 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 140 / 5e-37 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 138 / 3e-36 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10007458 [exp] 133 / 3e-35 AT2G44210 266 / 2e-85 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Lus10003100 [exp] 133 / 1e-34 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 124 / 8e-32 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221200 [exp] 175 / 9e-51 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 162 / 5e-46 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G007000 [exp] 155 / 2e-43 AT5G56530 188 / 2e-55 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.001G233000 [exp] 153 / 2e-42 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 142 / 4e-38 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.013G050100 [exp] 140 / 1e-37 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 140 / 2e-37 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.019G024100 [exp] 139 / 4e-37 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 131 / 4e-34 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 125 / 5e-32 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10002231 pacid=23172023 polypeptide=Lus10002231 locus=Lus10002231.g ID=Lus10002231.BGIv1.0 annot-version=v1.0 ATGGTGTCGAAGAATGCTTTAGGGATTGTACTGATTTGTTGTTTTATGGCCTTAGGCTATAATCCAATTACATGCCTCAATTTGTCTGAAGAAGAAGATT CAAAATTGGAGAGCCAATTAAAACTTTTGAATAAACGAAGTGTTATATCAATTCAGGCGAAGTACGGCGATTGGTACGACTGCGTTGATTTTTATGAACA ACCCGCTTTCGATCATCCTTTATTAAAGGATCATAAGTATCAATATAAGATGAGCACTTGGAATGGTGGCCAACTAAGTGAAAATATCGCCATTAATCCT TCTGATATTTGGTTAAATAAGAAAGGATGTCCGGCTAACACAGTTCCGACAAAAAGAGTTACCAAAGAGGATCTCATCGGAATAAATAAGGCTAACGAGT TAGCTAATGATTTCGATGAAACCTCCGGCGTTCAAGTTGCCGTGCTTCGAACGACTAGCAATGACAAATTCTACGGAGGTGGAATGACTGCCGCTATATA CCATCCTGCCGTTCAGAAAGATCAATACAGCTCAAGCCATATGAAGATTGTAAATGGTCCGGATAGTATCTCCGTCGGATGGACAGTTAATCCAAGTTTA TATCCGGATAACGAAACTCATCTCGTTATATATACAACTACCAAGGACTCATACTGCTATAACACATATTGTCCCGGTTTCGTAATTACGAGCCAATTTA TACATCCCGATCAGCTTCTAAAACTATATCCTGAACCTGGAAAAAGTGTGTGGGAAATAGCTCTATTGGTATACAAGGATGCTAAAAATGGGGACTGGGT TTTCAACGTGGGAAGTGGAAATTTTACCGTTGGAATCTGGCCGCAAAAAATATTCACTGGGTTAGCGGATTCCGCAAATTATATAGAATGGGGAGGAGAA GTTTACAGCCCTCCGGGAACTGCTCCCCCGCAAATGGGCGGGGGACCAATTCGAAGCCTTAATGTATTAGACGATTGTTACGCCTCTAGCATTAGGATCA TAAATGAGAATCACGAGACCGATCTCAACCCGTCGGGATGTGAAACGTTTTCGACTAGCTTATCGTATAGGGTAACGGACGTCGGAAATTATGGACCGCA TGAAATGCGTACTGTTTTCTTCGGGGGTACTTCGAATTAA
AA sequence Show only first row Show all	>Lus10002231 pacid=23172023 polypeptide=Lus10002231 locus=Lus10002231.g ID=Lus10002231.BGIv1.0 annot-version=v1.0 MVSKNALGIVLICCFMALGYNPITCLNLSEEEDSKLESQLKLLNKRSVISIQAKYGDWYDCVDFYEQPAFDHPLLKDHKYQYKMSTWNGGQLSENIAINP SDIWLNKKGCPANTVPTKRVTKEDLIGINKANELANDFDETSGVQVAVLRTTSNDKFYGGGMTAAIYHPAVQKDQYSSSHMKIVNGPDSISVGWTVNPSL YPDNETHLVIYTTTKDSYCYNTYCPGFVITSQFIHPDQLLKLYPEPGKSVWEIALLVYKDAKNGDWVFNVGSGNFTVGIWPQKIFTGLADSANYIEWGGE VYSPPGTAPPQMGGGPIRSLNVLDDCYASSIRIINENHETDLNPSGCETFSTSLSYRVTDVGNYGPHEMRTVFFGGTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15050			Protein of Unknown Function (D...		Lus10002231 [exp]	0	1
AT5G66930			unknown protein		Lus10000838 [exp]	6.6	0.7805
					Lus10015798 [exp]	6.9	0.8137
					Lus10001343 [exp]	10.7	0.7765
					Lus10028295 [exp]	11.4	0.7918
AT1G50660			unknown protein		Lus10002072 [exp]	12.1	0.7840
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	13.4	0.7604
					Lus10004305 [exp]	14.3	0.6836
					Lus10004306 [exp]	14.3	0.6568
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	15.2	0.7582
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	15.9	0.7291

Compare expression of checked genes

Lus10002231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.