Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 357 / 2e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 331 / 3e-96 transmembrane receptors;ATP binding (.1.2) AT1G27180 318 / 3e-91 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 294 / 1e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 281 / 2e-79 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 279 / 2e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 279 / 6e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 271 / 4e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 272 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 268 / 2e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002249 [exp] 1406 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 1368 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 1366 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 1316 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 1114 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 929 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 920 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 846 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 843 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001602 [exp] 410 / 1e-126 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 407 / 2e-123 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 395 / 3e-122 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 384 / 6e-122 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 392 / 3e-121 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 396 / 5e-121 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 394 / 2e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 392 / 1e-119 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 391 / 5e-119 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 390 / 6e-119 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10002247 pacid=23172022 polypeptide=Lus10002247 locus=Lus10002247.g ID=Lus10002247.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGAGAGATGTTGCTACTCTGGTTGCCTTGCTTCTCCCACTCATTCTTCTCTACAAGTTTTGGAGACGAAATTCCAAACACTCAATCGTCA ACCATGATGACGATTCAACATCTGAAGCTGATACCATACCCGACTCCACAAATCCCTCTGTTTCGTTTCCCTGCGTGGAGTATGAGGTGTTTTTGAGTTT CAGGGGTCCAGATACTCGGTATCAAATCACCGACATCCTCTATCGTTTTCTTTGTCGCACAAAGATTCACACGTTTAAAGATGATGATGAGCTTCGTAAG GGAGAAGAGATAAAGGTCAACCTCCTCAAAGCAATCGACCAGTCGAAAATTTATGTCCCGATCATATCAAGGGGTTACGCCGATAGTAAATGGTGTCTTA TGGAGCTTGCTGAAATCATTCGACACCAAGATCAGGACCCTCGACGGATTATACTTCCTATTTTTTATATGGTGAATCCAAAAGATGTGCGACATCAGAC TGGACCTTATCGAAAGGCATTTCAAGAACACACGACTAAATATGATGCAATCACCATACAGAACTGGAAAGATGCTCTGAATAAGGTTGGAACTTTAAAA GGATGGCACGTCAAGAACAATGACGAGCAAGGAGCTATAGCAGATGAAGTTTCTGCAGATATATGGTCACATATAAGTAAGGAAAATTCCATTTTAGAAA CTGATGAGTTGGTTGGAATTGGTCATCATGTAGAAGCTATATTAGAAATGTTGAGTCTAGACTCTGAAAGTGTGACAATGGTCGGACTTTATGGTATGGG CGGAATAGGCAAGACGACCACTGCAAAGGCGGTTTATAACAAGATTTCTTCTCATTTCGATCGATGTTGTTTCGTCGATAATGTACGAGCAATGCAAGAG CAGAAGGATGGCATTTTTATTTTGCAAAAGAAGCTGGTATCTGAAATTTTGAGGATGGATTCTGTTGGATTTACTAATGATAGTGGCGGAAAAAAGATGA TAAAAGAGAGAGTTTCGAGGTCCAAAATTCTTGTCGTTCTCGATGATGTTGACGAGAAGTTTAAATTTGAAGATATACTCGGCTGTCCTAACGATTTTGA TTCTGGGACTAGATTCATCATTACTTCAAGAAATCAAAATGTCTTGAGTCATTTGAATGAGAATCAATGCAAGTTGTATGAAGTTGGATCGATGAGCCAA CAACATTCGCTCGAACTCTTCTCCAAACACGCATTCAAAAAGGATACGCCTCCATCAGATCATAAGACTCTAGCAAATGATATTGTATCGACTACAGGAG GACTTCCATTGACTTTGAAGGTTACAGGTTCACTTTTATTCAGACAAGAGATTGGGGTTTGGGAAGATACGTTGGAACAGTTACGTAAAACACTTGACCT TGATGAGGTTTATGATAGGCTAAAAATAAGTTACGACGCGTTGAAAGCGGAGGCAAAAGAGATTTTCTTGGATATAGCTTGCTTCTTCATCGGAACAAAC AAAGAAATGCCATATTACATGTGGAGTGACTGCAATTTTTATCCTAAAAGTAATATTATTTTTCTCATTCATAAATGTATGTTACAAGTTGGGGATGATG GGGTGTTTAAAATGCACGATCAACTTAGAGATATGGGTAGAGAAATTGTGAGACGAGAGGATGTGGAACGGCCGTGGAAGAGAAGTAGGATATGGTTGAT CGAAGAAGGAATTGATCTCTTGTTGAACAAAAAGGGATCAAGTGAAGTAAAAGCAATTAGCATACCGTCACCCTGGGAGTCGGGTGTCAAGTATGAGTTT AAGAGCGAATATTTCTTGAATTTCTCAGGGCTGAGATACTTCAATGCACACTCACTCATCCTTACCGGAGATTTCGATAATCTTCTCCCGAATTTAAAGT GGCTTCAGTTGCACGAGTATAGAGATGAAGAGGATGATCCTCCTATGACCAATTTTACTATGAAAAATTTGGTAATTCTTGTTTTGACCAATAGCAAAAC AGACTGGAGCGATATGATTAAGATGGCTGAGAGGCTGAAAGTTGTACGACTTTCTTCCAACTATGGGGTCTCGGAAAGACTTTCTGGCTGTTGGCGCTTC CCCAAAAGCATTGAGGTATTATCCATGTTTCTGATAGAAATCAAGGAACTTGATATTGGGGAGTTAAAGAAGCTAAAGACGTTGGATCTGAGCTACAGTG CAATACAAAAGATAAGTGGGGGAACCGTTGGTATGTTGAAGGGACTCATAGAGCTTCATCTCGACTCCATCAAGTGCACAAATTTGAGAGAGGTAGTTGC CGATATTAGTCAACTTTTGTCTCTCAAAGTCTTGAAAACAGCCGGAGCTAAGGAGGTCAAGGTGAATGAATTTCCATTAGGTTTGAAGGAGTTATCCACA TCATCTCGGATTCCGAATCTTTCACAGTTGTTGGATTTGGAGGTACTGTTGGTTTATTATTGCAAGGATGGAATCGACATCCCTCCTGCTAACAGTACTG AAGATGAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTCTTTGGCACTCATTAACACAGAAATCAATGTCAACGTTGTGGATGATGCTTCTCCCCG TGGTCACCTTCCTCGTTATTTACTACCAACGTCCCTAACCTCTCTCGAAATTAATTCGTGTGAAGAACCAACGTGGCTTCCAGGAATAGAAAACTTGGAG AATTTGACTTCGCTGGAAGTCAAAAACGTCTTCCAAATTCTTGGAGGCGATTTGGATGGGCTACAAGGGTTGAGATCATTGGAAATTCTTATGATCCGAC GTAAATGGTTTAATTCGGATCAAAGGGCTTAA
AA sequence Show only first row Show all	>Lus10002247 pacid=23172022 polypeptide=Lus10002247 locus=Lus10002247.g ID=Lus10002247.BGIv1.0 annot-version=v1.0 MSYLRDVATLVALLLPLILLYKFWRRNSKHSIVNHDDDSTSEADTIPDSTNPSVSFPCVEYEVFLSFRGPDTRYQITDILYRFLCRTKIHTFKDDDELRK GEEIKVNLLKAIDQSKIYVPIISRGYADSKWCLMELAEIIRHQDQDPRRIILPIFYMVNPKDVRHQTGPYRKAFQEHTTKYDAITIQNWKDALNKVGTLK GWHVKNNDEQGAIADEVSADIWSHISKENSILETDELVGIGHHVEAILEMLSLDSESVTMVGLYGMGGIGKTTTAKAVYNKISSHFDRCCFVDNVRAMQE QKDGIFILQKKLVSEILRMDSVGFTNDSGGKKMIKERVSRSKILVVLDDVDEKFKFEDILGCPNDFDSGTRFIITSRNQNVLSHLNENQCKLYEVGSMSQ QHSLELFSKHAFKKDTPPSDHKTLANDIVSTTGGLPLTLKVTGSLLFRQEIGVWEDTLEQLRKTLDLDEVYDRLKISYDALKAEAKEIFLDIACFFIGTN KEMPYYMWSDCNFYPKSNIIFLIHKCMLQVGDDGVFKMHDQLRDMGREIVRREDVERPWKRSRIWLIEEGIDLLLNKKGSSEVKAISIPSPWESGVKYEF KSEYFLNFSGLRYFNAHSLILTGDFDNLLPNLKWLQLHEYRDEEDDPPMTNFTMKNLVILVLTNSKTDWSDMIKMAERLKVVRLSSNYGVSERLSGCWRF PKSIEVLSMFLIEIKELDIGELKKLKTLDLSYSAIQKISGGTVGMLKGLIELHLDSIKCTNLREVVADISQLLSLKVLKTAGAKEVKVNEFPLGLKELST SSRIPNLSQLLDLEVLLVYYCKDGIDIPPANSTEDEGSVWWKVSKLKSLALINTEINVNVVDDASPRGHLPRYLLPTSLTSLEINSCEEPTWLPGIENLE NLTSLEVKNVFQILGGDLDGLQGLRSLEILMIRRKWFNSDQRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	1.0	0.9710
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	3.5	0.9159
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	4.2	0.8876
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	8.8	0.8787
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	15.2	0.9095
AT5G58880			unknown protein		Lus10005869 [exp]	17.0	0.8726
AT5G65030			unknown protein		Lus10026048 [exp]	21.0	0.8956
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10014127 [exp]	22.2	0.8566
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	27.4	0.8843
					Lus10007776 [exp]	36.7	0.8555

Compare expression of checked genes

Lus10002247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.