Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 284 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 270 / 1e-74 transmembrane receptors;ATP binding (.1.2) AT1G27180 268 / 1e-73 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46270 253 / 3e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 238 / 3e-64 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 228 / 6e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 230 / 9e-62 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G22690 227 / 3e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 227 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 224 / 2e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002247 [exp] 1368 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 1323 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 1317 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 1284 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007790 [exp] 1082 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 896 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 800 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 743 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 740 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143300 [exp] 348 / 2e-101 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 329 / 4e-100 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 340 / 1e-99 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 336 / 1e-99 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 337 / 1e-98 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 336 / 3e-98 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 322 / 3e-93 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 320 / 2e-92 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 316 / 2e-92 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 305 / 2e-92 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10002249 pacid=23172026 polypeptide=Lus10002249 locus=Lus10002249.g ID=Lus10002249.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGAGAGATGTTGCTACTCTGGTTGCCTTGCTTCTCCCACTCATTCTTCTCTACAAGTTTTGGAGACGAAATTCCAAACACTCAATCGTCA ACCATGATGACGATTCAACATCTGAAGCTGATACCATACCCGACTCCACAAATCCCTCTGGTTCGTTTCCCTCCGCGGAGTATGAGGCGTTTTTGAGTTT CAGGGGTTCTGATACTCGTTCTCTAATCACCGACATCCTCTATCGTTTTCTTTGTCGCACAAAGATTCACACGTTTAAAGACGATGATGAGCTTCGTAAG GGAGAAGAGATAAAGGTCAACCTCCTCAAAGCAATCGACCAGTCGAAAATTTATGTCCCGATCATATCAAGGGGTTACGCCGATAGTAAATGGTGTCTTA TGGAGCTTGCTGAAATCATTCGACACCAAGATCAGGACCCTCGACGGATTATACTTCCTATTTTTTATATGGTGAATCCAAAAGATGTGCGGCATCAGAC TGGACCTTATCGAAAGGCATTTCAAGAACACGCGACTAAATATGATGAAATGACCATACAGAGCTGGAAAGATGCTCTGAATAAGGTTGGAACTTTAAAA GGATGGCACGTCAAGAACAATGACGAGCAAGGAGCTATAGCAGATGAAGTTTCTGCAAATATATGGTCACATATAAGTAAGGAAAATTCCATTTTAGAAA CTGATGAGTTAGTTGGAATTGATGATCACGTAGAAGCTATATTAGAAATGTTGAGTCTAGACTCTGAAAGTGTGACAATGGTCGGACTTTATGGTATGGC CGGAATAGGCAAGACGACCACTGCAAAGGCGGTTTATAACAAGATTTCTTCTCATTTCGATCGATGTTGTTTCGTTGATAATGTACGAGCAATGCAAGAG CAGAAGGATGACATTTTTATTTTGCAAAAGAAGCTGGTATCTGAAATTTTGAGGATGGATTCTGTTGGATTTACTAATGATAGTGGCGGAAGGAAGATGA TAAAGGAAAGAATTTCGAAGTCCAAAATTGTTGTCGTTCTCGATGATGTTGACGAGAAGTTTAAATTTGAAGATATACTCGGCTGTCCTAACGATTTTGA TTCTAGGACTAGATTCATCATTACTTCAAGAAATCAAAATGTCTTGAGTCATTTGAATGAGAATCAATGCAAGTTGTATGAAGTTGGATCGATGAGCCAA CCAGATTCGCTCGAACTCTTCTCCAAACACGCATTCAAAAAAAATACGCCTCCATTGGATTATGAGACTCTAGCAAATGATATCGTATCAACTACAGGAG GACTTCCATTGACTTTGAAGGTTACAGGTTCACTTTTATTCAGACAAGAGATTGGGGTTTGGGAAGATACGTTAGAACAGTTACGTAAAACACTTGACCT TGATGAGAGATGTATGATACAAGGTGGGGATGGTGGGGGGTTTGAAATGCACGACCCACTTAGAGAGATGGGTAGAGAAATTGGGAGACGAGAGGATGTG GAGCGGCCGGGGAAGAGAAGGAGGATATGGTCGAGCGAAGAAAGAATTGATCTCTTGTTGAACAAAAAGGGATCAAATCAAGTAAAAGCAATTAGTATAC AGTCACCCTTGGAGTGGAATGTCAAGTATGAGTTTAAGAGTGAATGTTTCTTGAATTTGTCAGAGTTGAGATACTTTTATGCAGGATCAAGAATATTGCT GACCGGAGATTTCAATAATCTTCTCCCGAATTTGAAGTGGCTTCAGTTGCCATCTTACGTACATAGAGAGGATGGTCCTCCTTGGACCAATTTTACTATG AAAAATCTGATAATTCTTATTCTTGAGGATGGCATCACATTGGCTGATGATTGGGGACGTTGGAGACATATGATTAAGATGGCTGAGAGGCTGAAAGTTG TACGACTTTCTTCCATCAGGTCGGTCCTGCAAAGAATTTCTGGCTGTTGGCGCTTCCCCAAAAGCATTGAGGTAATATCCATGTATATGATGAAAATGGA GGAACTTGATATTGGGGAGTTGAAGAAGCTAAAGACGTTGAATCTGAGCTACTGTACAATACACAAGATAAGTGGGGGAACCTTTGGTATGTTGAAGGGA CTCATACAGCTTGATCTCGACCACTTCAAGTGTACAAATTTGAGAGAGGTAGTTGCTGATGTTGGTCAGCTGTCGTCTCTCAAAATCTTGAAAACATTCA CAGTTAAGGAGGTCGAGCTTAATGAATTTCCATTAGGTTTGAAGAAGTTATACACTTCATCTGTGATTCCGAATCTTTCAGATTTGTTGGATTTGGAGGT ACTGGTGGTTTATGATTGCAACGATGGAATCGACATCCCTCCTGCTAACAGTACTGAAGATGAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTCT TTGAAACTCAGGAATACAAGAATCAATATAAAAGTTGTGGATGATGCTTCTTCCGGTGGTCACCTCCCTCGTTATTTACTACCAACGTCCCTAACCTCTC TCCAAATTGCTTGGTGTGAAGAACCAACGTGGCTTCCAGGAATAGAGAACTTGGAGAATTTGACTTCGCTGGAAGTCAACGACATCTTCCAAACTCTTGG AGGTGATTTGGATGGGCTACAAGGGTTGAGATCGTTGGAAACTCTTAGCATTCGGAAAGTAAATGGTTTAGTTAGGATCAAAGGGCTTAAGGATCTCTTG AGTTCTTCTACCTGCAAGTTGCAGAAATTACATATTGAAAATTGCCATGACCTCACTGAGTTACTCCCATGCGAACTCGACGACCAAACAGTGGTAGTCC CCTCTCTGGAGGAGGATCTGGATGGGATTGGATCCCTAGAAGCGTTGGCTAGTTTGGACTTAAGGTTAGATGATACATCTTCTTCCAGCATAGAGAGGAT ATCTTTCTTGTCGAAGCTGCAAAAGTTAACTACACTCAGAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTTTACAAAGA TTGGATCTAGAGGGATGCACGTCGTTGGGGAGACTATGGCCTGATGAACAGCAACTAGATAATAATAAGCGTGTGTGGATAGACATCCGAGGTTGCAAAA GCTTGAGTGTTGATCATCTCTCTGCACTCAAGACCACTCTATCGCCCAATGTAGAGATAAGATGGCCCCATGAAGAAATGTAA
AA sequence Show only first row Show all	>Lus10002249 pacid=23172026 polypeptide=Lus10002249 locus=Lus10002249.g ID=Lus10002249.BGIv1.0 annot-version=v1.0 MSYLRDVATLVALLLPLILLYKFWRRNSKHSIVNHDDDSTSEADTIPDSTNPSGSFPSAEYEAFLSFRGSDTRSLITDILYRFLCRTKIHTFKDDDELRK GEEIKVNLLKAIDQSKIYVPIISRGYADSKWCLMELAEIIRHQDQDPRRIILPIFYMVNPKDVRHQTGPYRKAFQEHATKYDEMTIQSWKDALNKVGTLK GWHVKNNDEQGAIADEVSANIWSHISKENSILETDELVGIDDHVEAILEMLSLDSESVTMVGLYGMAGIGKTTTAKAVYNKISSHFDRCCFVDNVRAMQE QKDDIFILQKKLVSEILRMDSVGFTNDSGGRKMIKERISKSKIVVVLDDVDEKFKFEDILGCPNDFDSRTRFIITSRNQNVLSHLNENQCKLYEVGSMSQ PDSLELFSKHAFKKNTPPLDYETLANDIVSTTGGLPLTLKVTGSLLFRQEIGVWEDTLEQLRKTLDLDERCMIQGGDGGGFEMHDPLREMGREIGRREDV ERPGKRRRIWSSEERIDLLLNKKGSNQVKAISIQSPLEWNVKYEFKSECFLNLSELRYFYAGSRILLTGDFNNLLPNLKWLQLPSYVHREDGPPWTNFTM KNLIILILEDGITLADDWGRWRHMIKMAERLKVVRLSSIRSVLQRISGCWRFPKSIEVISMYMMKMEELDIGELKKLKTLNLSYCTIHKISGGTFGMLKG LIQLDLDHFKCTNLREVVADVGQLSSLKILKTFTVKEVELNEFPLGLKKLYTSSVIPNLSDLLDLEVLVVYDCNDGIDIPPANSTEDEGSVWWKVSKLKS LKLRNTRINIKVVDDASSGGHLPRYLLPTSLTSLQIAWCEEPTWLPGIENLENLTSLEVNDIFQTLGGDLDGLQGLRSLETLSIRKVNGLVRIKGLKDLL SSSTCKLQKLHIENCHDLTELLPCELDDQTVVVPSLEEDLDGIGSLEALASLDLRLDDTSSSSIERISFLSKLQKLTTLRVKVPSLREIEGLAELKSLQR LDLEGCTSLGRLWPDEQQLDNNKRVWIDIRGCKSLSVDHLSALKTTLSPNVEIRWPHEEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	0	1
AT4G37030			unknown protein		Lus10001003 [exp]	1.7	0.7286
					Lus10005511 [exp]	3.7	0.6915
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	3.9	0.7596
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	5.5	0.7005
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	6.3	0.7361
AT2G34050			unknown protein		Lus10007055 [exp]	6.9	0.6033
AT5G36930			Disease resistance protein (TI...		Lus10001039 [exp]	12.5	0.7257
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	12.7	0.7064
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	15.0	0.7220
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006184 [exp]	23.7	0.6299

Compare expression of checked genes

Lus10002249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.