Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66230 248 / 2e-80 MYB ATMYB20 myb domain protein 20 (.1) AT5G16600 238 / 3e-76 MYB ATMYB43 myb domain protein 43 (.1) AT4G22680 230 / 7e-74 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 228 / 1e-72 MYB ATMYB42 myb domain protein 42 (.1) AT5G62320 200 / 1e-62 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT5G14340 199 / 6e-62 MYB AtMYB40 myb domain protein 40 (.1) AT3G02940 194 / 3e-59 MYB ATMYB107 myb domain protein 107 (.1) AT3G61250 193 / 3e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G28110 192 / 4e-59 MYB ATMYB41 myb domain protein 41 (.1) AT5G10280 194 / 5e-59 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004043 [exp] 532 / 0 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10004042 [exp] 437 / 3e-154 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10002297 [exp] 264 / 8e-87 AT5G16600 208 / 1e-65 myb domain protein 43 (.1) Lus10027197 [exp] 236 / 1e-76 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 236 / 2e-76 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10032226 [exp] 235 / 3e-75 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 235 / 4e-75 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10010974 [exp] 223 / 5e-72 AT5G16600 215 / 8e-70 myb domain protein 43 (.1) Lus10032117 [exp] 203 / 3e-63 AT5G14340 244 / 9e-81 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130300 [exp] 249 / 8e-81 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.004G086300 [exp] 248 / 4e-80 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.001G118800 [exp] 239 / 2e-77 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.015G129100 [exp] 236 / 3e-76 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.003G114100 [exp] 234 / 2e-75 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.012G127700 [exp] 234 / 2e-75 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.001G336700 [exp] 205 / 6e-64 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 201 / 3e-62 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.007G093900 [exp] 199 / 4e-61 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 195 / 2e-59 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002296 pacid=23171936 polypeptide=Lus10002296 locus=Lus10002296.g ID=Lus10002296.BGIv1.0 annot-version=v1.0 ATGGGAAGACAGCCTTGCTGTGACAAAGTAGGATTGAAGAAAGGTCCATGGACTGCTGATGAAGACCGTAAGCTCATCAACTTCATCCTCACCCATGGCC AATGCTGCTGGCGTGCTGTCCCTAAGCTTTCTGGGCTGTTGAGATGTGGGAAGAGCTGCAGACTGAGATGGACTAACTACTTGAGGCCTGATTTGAAGAG AGGCCTCCTCTCTGAATCTGAGGAGAAACTTGTCATTGATCTTCATGCTCAACTTGGCAACAGGTGGTCAAAAATTGCATCGCAAATGCCAGGAAGGACA GACAACGAGATAAAAAATCACTGGAACACTCACATTAAGAAAAAGCTGAGGAAAATGGGCATCGACCCACTCACCCACCAGCATTTACCTCCCACCACCA CCACTGGCACTGACACAACTCCTCATGAACAACAAGAACAACACTCTTCCAGCAAAGACATCATCAGTACAAACGAACAAGACCCTGTGGTACTCAACAC TGTGTCCCCGGAATCTGCCACGGAGGCAACATCACCGCTGATGTCATCGATATCATCATCATCGTCCAGCTCGACAATCGTGGATGACGATCTGCAATCG GCGATCACCCAGTTAGCCAATCAGCTGGATGTCCCCGATTACCACAATGCTGTGGAGGGAGTGCTGAGTTATGATGATATTGCTGGGTTCAGCTTAGAGG ACGTTCCATTGGTTGAGTTTGAGCCACATGAGATTATTACTAATGACTGCAGTAGAACTAATAATATTAATATCGACATTGACGCGGAATTTTTACCACC AGCTAATTTGTCTTCAAGTTCGTCATCATGTACTGATAATCACACCGACGACTCGGCTAATGCCGGTAGGAGAAATGACTATACTATCCTTGAAGCTGCT GAAGACGATTGCTGGTGGGCTTCACAGCTGACGACGAAGGAGGGCCAGCTAATGGACTTGTGGGCCGATGAGGATTTAGGCTGCTGGGATTTGGCGGTTA ATGACGAGATTAACTGCGAGATACAGATGATGGCTGCTAGTCTTGGGAGTTGTCTGGATGCGGTTGATGATTATTCTTCATGGACCTGTAGATGA
AA sequence Show only first row Show all	>Lus10002296 pacid=23171936 polypeptide=Lus10002296 locus=Lus10002296.g ID=Lus10002296.BGIv1.0 annot-version=v1.0 MGRQPCCDKVGLKKGPWTADEDRKLINFILTHGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKLVIDLHAQLGNRWSKIASQMPGRT DNEIKNHWNTHIKKKLRKMGIDPLTHQHLPPTTTTGTDTTPHEQQEQHSSSKDIISTNEQDPVVLNTVSPESATEATSPLMSSISSSSSSSTIVDDDLQS AITQLANQLDVPDYHNAVEGVLSYDDIAGFSLEDVPLVEFEPHEIITNDCSRTNNINIDIDAEFLPPANLSSSSSSCTDNHTDDSANAGRRNDYTILEAA EDDCWWASQLTTKEGQLMDLWADEDLGCWDLAVNDEINCEIQMMAASLGSCLDAVDDYSSWTCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	0	1
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	1.0	0.9381
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	1.7	0.9237
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	2.0	0.9338
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	4.1	0.8713
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	9.8	0.8932
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	12.8	0.8850
					Lus10030114 [exp]	13.4	0.8615
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	14.1	0.8704
					Lus10018742 [exp]	14.1	0.9217
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	14.3	0.9188

Compare expression of checked genes

Lus10002296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.