Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16600 204 / 2e-64 MYB ATMYB43 myb domain protein 43 (.1) AT1G66230 202 / 7e-64 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 190 / 3e-59 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 184 / 6e-57 MYB ATMYB42 myb domain protein 42 (.1) AT5G14340 164 / 3e-49 MYB AtMYB40 myb domain protein 40 (.1) AT3G61250 160 / 2e-47 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G62320 156 / 2e-46 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT4G38620 154 / 2e-45 MYB AtMYB4 myb domain protein 4 (.1) AT3G02940 151 / 8e-44 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 150 / 3e-43 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004042 [exp] 264 / 3e-87 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10002296 [exp] 256 / 5e-84 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004043 [exp] 255 / 1e-83 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10032226 [exp] 190 / 6e-59 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10038913 [exp] 188 / 7e-59 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10027197 [exp] 187 / 9e-59 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10024589 [exp] 189 / 2e-58 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10032117 [exp] 167 / 2e-50 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10014569 [exp] 166 / 1e-49 AT5G14340 239 / 7e-79 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130300 [exp] 218 / 2e-69 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.004G086300 [exp] 206 / 5e-65 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.001G118800 [exp] 191 / 8e-60 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.003G114100 [exp] 191 / 1e-59 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.012G127700 [exp] 187 / 5e-58 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 184 / 9e-57 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.001G336700 [exp] 165 / 1e-49 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 159 / 3e-47 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.007G093900 [exp] 154 / 8e-45 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.002G096800 [exp] 154 / 2e-44 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002297 pacid=23171934 polypeptide=Lus10002297 locus=Lus10002297.g ID=Lus10002297.BGIv1.0 annot-version=v1.0 ATGGGAAGACAACCTTGCTGTCACAAAGTTGGACTGAAGAAAGGTCCATGGACTGCTGACGAAGACCGTACGCTCGTCAACTTCATCCTCACCAATGGCC AATGCTGCTGGCGTGCTGTCCCTAAGCTTTCTGGGTTGTTGAGATGTGGGAAGAACTGCAGACTGAGGTGGATTAACTACCTAAGGCCTGATTTGAAGAG AGGACTCCTCTCAGAATCTGATGAGAAACTTGTCATTGATCTTCATGCTCAGCTTCGCAACAGACACAATATAGAAAATTACTGGAACACCCACATCAAG AAAAAGCTCCGGAATATGGGCATCGACTCATGCACCCACCAGCCTTTACTCTCTCATCCTCCTCGTGTACAAAAGTCTTCTAGCAAAGACATTAGTACAA TTAAACAAGACCCTGTACGTATTAACATTGTCTCCTCGGAATCTGCCACGTCCGAGGCGACATCGCCACTGACATCATCGATTTCATTCCTGGACAAGTT AGCCAAACAGCTAGATGCCCCCGATTACCACAATGTTGATTGCAGCATTGAACAAGTGCTGACTTATGACGATGCGTTCTGCTTAAAGGAAGTTCCATTA GTTGAGCCACCTGAGATTACTACTAATGACTGCGGTAACCATCGGGAGGGTGGTAGCCGGCGTGGATTCGAGCCGGGAAGCAGCCGGAACTCCCCGTTGC CGACGTCCCTATCTCGCTGGGCGGGTCACTTGAAGCTGACCCGTCACGAGCACATCATCGTCGGCCATGTTCCCGCGTACACGTTCAGAGGGGGTCGGGT CATGGCGGTGGCTCGGGCCATGTTGTGTATATATTATGCTACAAACTCCAACTAA
AA sequence Show only first row Show all	>Lus10002297 pacid=23171934 polypeptide=Lus10002297 locus=Lus10002297.g ID=Lus10002297.BGIv1.0 annot-version=v1.0 MGRQPCCHKVGLKKGPWTADEDRTLVNFILTNGQCCWRAVPKLSGLLRCGKNCRLRWINYLRPDLKRGLLSESDEKLVIDLHAQLRNRHNIENYWNTHIK KKLRNMGIDSCTHQPLLSHPPRVQKSSSKDISTIKQDPVRINIVSSESATSEATSPLTSSISFLDKLAKQLDAPDYHNVDCSIEQVLTYDDAFCLKEVPL VEPPEITTNDCGNHREGGSRRGFEPGSSRNSPLPTSLSRWAGHLKLTRHEHIIVGHVPAYTFRGGRVMAVARAMLCIYYATNSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10002297 [exp]	0	1

Compare expression of checked genes

Lus10002297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.