Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18770 234 / 7e-73 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 182 / 7e-53 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G58850 182 / 7e-53 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 177 / 4e-51 MYB ATMYB64 myb domain protein 64 (.1) AT5G40360 171 / 2e-49 MYB ATMYB115 myb domain protein 115 (.1) AT3G09370 147 / 2e-39 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 145 / 2e-38 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 139 / 1e-35 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G32730 137 / 6e-35 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT2G25230 126 / 1e-33 MYB ATMYB100 myb domain protein 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042111 [exp] 566 / 0 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10027695 [exp] 282 / 7e-90 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10039966 [exp] 266 / 3e-85 AT4G18770 256 / 2e-81 myb domain protein 98 (.1) Lus10040684 [exp] 176 / 3e-51 AT5G58850 261 / 5e-84 myb domain protein 119 (.1) Lus10018220 [exp] 175 / 2e-50 AT5G58850 257 / 7e-82 myb domain protein 119 (.1) Lus10005864 [exp] 172 / 3e-49 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10013084 [exp] 163 / 2e-46 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 162 / 1e-45 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10025351 [exp] 146 / 7e-39 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077700 [exp] 256 / 4e-81 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.012G082000 [exp] 250 / 8e-79 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 235 / 4e-73 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 197 / 2e-58 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 184 / 3e-53 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.001G250000 [exp] 181 / 3e-52 AT5G58850 221 / 7e-67 myb domain protein 119 (.1) Potri.006G085600 [exp] 149 / 1e-39 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 142 / 2e-36 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 141 / 3e-36 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 135 / 6e-35 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002384 pacid=23179408 polypeptide=Lus10002384 locus=Lus10002384.g ID=Lus10002384.BGIv1.0 annot-version=v1.0 ATGGAGCATGAAACTGACACTTTTGTCTCCTCCCAAGCACTGTTTATGCCTCAGAATAATTATAACATGACCACCCTGAGCCACCACCACCACCGACATC CGCCGCCGAATTTCCAGGAGCCGCCGTCGCAGCTGCAGTCAACTGTGTTTCCTCAGGAGGAGGATCACTTGTTTGGACAAAATATTGGGTCGTCGTCAAA TCAAGTGTTTGGAGTCAACACATGGTCCAATTTGGATTCTTATGATGTTTACTCGTATGGATCTTCCTCCTCAAACAATTATGAGTCTGAGTGTAAGCCC TTTGCTAATATCAATGGTGAGAAATTCAATAATCAGATGGTGAATATGGTTGCTGCTCCAGTGGACAAAAAGACTTGGAAAGGTAAGAAGAACGTGGTGA AGGGCCAATGGACAATCGATGAAGACAGGTTGTTAGTTCAGTTCGTGGGACAATATGGGACCAAAAAATGGTCATACATCGCTCAGATGCTGCCCGGAAG AATTGGGAAGCAGTGTCGAGAGAGATGGCACAATCATCTCAAACCTGATATTAAGAAAGATACATGGACAGAAGATGAGGACAAAGTGCTAATACATTCA CATATAGAGATTGGGAACAAATGGGCAGAGATAGCCAAGAGGCTCCCTGGAAGAACAGAGAACTCAATCAAGAACCACTGGAATGCAACCAAGAGGAAGC AATACTCGAAGCGCAAATGCCGCTCTACCAAATACCCTCGAACTTCCATTCTCCAGGACTACATCAAGAGCTTGAACTTGGTTAACTCTACTTCCAACAA AAGATCATCCTCCTCCAAGAACAACACTACTAATGCTGCTACTGCTACTTCCTCCGCCATCATTCCAGCAGCACCTCTGCCCTTGGCTCGTCGTCCGGAG CATAACAACTCTGAGTCTCTCCTCCATCCACAACTGAGCATGGATCACTTGTATGAGGAAAATGACCGGTTGGTACCCGATTTCGATTTCATGAGTAATG AAGAGGTCCCTGATTTTGGAGTTGATGACGAGATGTTTCAAGATGGATGCAGCATTGAGTCTCTGCTTGATGGTTTGTCTTCCTGTGAACCACTGGTTGA TGAGAAGAGCTTCAACAAGTCAGTCGAGGATGCAATGCTGTCAATGCCTTTCGAGGTGAAGAAGGAGATGGACTTGGTGGAGATAGATGAATTTACAGGG AAAGGGCCTTTGAATCATAGTCCAAATATATACATGCTTAAAAAGTGA
AA sequence Show only first row Show all	>Lus10002384 pacid=23179408 polypeptide=Lus10002384 locus=Lus10002384.g ID=Lus10002384.BGIv1.0 annot-version=v1.0 MEHETDTFVSSQALFMPQNNYNMTTLSHHHHRHPPPNFQEPPSQLQSTVFPQEEDHLFGQNIGSSSNQVFGVNTWSNLDSYDVYSYGSSSSNNYESECKP FANINGEKFNNQMVNMVAAPVDKKTWKGKKNVVKGQWTIDEDRLLVQFVGQYGTKKWSYIAQMLPGRIGKQCRERWHNHLKPDIKKDTWTEDEDKVLIHS HIEIGNKWAEIAKRLPGRTENSIKNHWNATKRKQYSKRKCRSTKYPRTSILQDYIKSLNLVNSTSNKRSSSSKNNTTNAATATSSAIIPAAPLPLARRPE HNNSESLLHPQLSMDHLYEENDRLVPDFDFMSNEEVPDFGVDDEMFQDGCSIESLLDGLSSCEPLVDEKSFNKSVEDAMLSMPFEVKKEMDLVEIDEFTG KGPLNHSPNIYMLKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10002384 [exp]	0	1
					Lus10008923 [exp]	2.8	0.7482
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	5.9	0.8100
AT4G33985			Protein of unknown function (D...		Lus10019852 [exp]	7.7	0.7513
					Lus10001078 [exp]	10.6	0.7550
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	18.6	0.7408
					Lus10029261 [exp]	20.9	0.7291
AT5G01660			unknown protein		Lus10040599 [exp]	22.6	0.7291
					Lus10038051 [exp]	24.2	0.7291
					Lus10003825 [exp]	25.6	0.7291
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	27.0	0.7291

Compare expression of checked genes

Lus10002384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.