Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33320 473 / 1e-166 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 335 / 1e-112 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G17630 200 / 6e-60 Nucleotide/sugar transporter family protein (.1) AT5G54800 195 / 3e-58 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 188 / 2e-55 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT1G61800 186 / 5e-55 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT4G03950 90 / 4e-20 Nucleotide/sugar transporter family protein (.1) AT1G21870 59 / 2e-09 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 54 / 6e-08 EamA-like transporter family protein (.1) AT1G06470 52 / 5e-07 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042110 [exp] 691 / 0 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10013083 [exp] 385 / 4e-132 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10022257 [exp] 265 / 1e-86 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10011155 [exp] 189 / 3e-56 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 189 / 1e-55 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10007653 [exp] 184 / 4e-54 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10013978 [exp] 184 / 7e-54 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10004312 [exp] 183 / 1e-53 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10019209 [exp] 183 / 1e-53 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077900 [exp] 537 / 0 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 518 / 0 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 391 / 2e-134 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.013G071900 [exp] 199 / 3e-59 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 188 / 2e-55 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 187 / 2e-55 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 186 / 8e-55 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.008G095200 [exp] 180 / 2e-52 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 179 / 3e-52 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 172 / 8e-51 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10002385 pacid=23179422 polypeptide=Lus10002385 locus=Lus10002385.g ID=Lus10002385.BGIv1.0 annot-version=v1.0 ATGCAGAGCGCCGCCTTCACCGCCTCCCCGTCCCTCTTCCGTCCGATTCGGAATCCGTCCTCTAACCCTAGGCTAGGACTCCGGTTTGACCCTATTCGAG CTACTCGTGAAGATCTCGGCACTTCCGGCAATGTCGTCTTCCCCCGCCGATCCTGGTCCCTTGTCTCCTCCTCCGCGTCTCCCAAGCTCCAGCTCAGGCC GTGGAACCCTTTGCCTTCCGGGAATAGATTCGACTTGAAGGCAACCTCCTCCGCCGAGAACGCTGGCGAGACGGAGGAGAACAAGGCTGGTGCTTTGACT AAGACTTTGGTGCTTGGATCGTTGTTTGGACTCTGGTATTTGTTCAACATCTACTTTAACATTTACAACAAGCAGGTCTTGAAAGTCTACCCTAATCCCA TAACAGTTACTGCGGTTCAGTTTGCTGTGGGCACTGTTCTTGTTACTTTCATGTGGACTTTCAACCTTTACAAGAGGCCAAAGATCAGCTGGGCTATGCT TGGTGCAATCCTGCCGCTTGCGATGGTCCACACTCTTGGTAATCTCTTCACTAACATGAGTCTTGGGAAAGTCGCTGTTTCCTTCACTCACACTATCAAG GCCATGGAGCCCTTCTTCTCGGTTCTTCTCTCTGCAATGTTCCTTGGCGAGAGGCGTGTGACTGTTTTCGTTTCCCTGCCACCTAGCAACATTCGTCTTT GTGAACATTCCCCATTGCAGCTATCTTTTTTAGGGGCTGGTTTCTGGACTGCAATGGCTTCTAATGTAACAAACCAGTCTCGTAATGTCCTTAGCAAAAA AGTCATGGTTAAGAAAGAGGACTCCATGGACAACATCACGCTCTTCTCAATCATCACAATAATGTCATTTTTCTTGCTGGCTCCCGTTGCTATCTTCATG GAAGGTGTCAAGTTCACACCAGCGTACCTCCAATCTGCTGGATTGAATGTTAAACAAGTGTACACTAGATCGTTGATTGCTGCTCTCTGTTTCCACGCCT ACCAGCAGGTATCCTATATGATACTGCAGAGAGTATCACCTGTGACCCACTCAGTCGGCAACTGCGTTAAGCGTGTGGTGGTTATCGTAAGCTCCGTCAT CTTCTTCCAGACGCCTGTTTCACCAGTCAATTCCCTAGGAACCGGGATAGCACTAGCTGGAGTTTTCCTGTACTCGAGAGTGAAGCGTATCAAGCCAAAG ACTAAGGAAGCTTAG
AA sequence Show only first row Show all	>Lus10002385 pacid=23179422 polypeptide=Lus10002385 locus=Lus10002385.g ID=Lus10002385.BGIv1.0 annot-version=v1.0 MQSAAFTASPSLFRPIRNPSSNPRLGLRFDPIRATREDLGTSGNVVFPRRSWSLVSSSASPKLQLRPWNPLPSGNRFDLKATSSAENAGETEENKAGALT KTLVLGSLFGLWYLFNIYFNIYNKQVLKVYPNPITVTAVQFAVGTVLVTFMWTFNLYKRPKISWAMLGAILPLAMVHTLGNLFTNMSLGKVAVSFTHTIK AMEPFFSVLLSAMFLGERRVTVFVSLPPSNIRLCEHSPLQLSFLGAGFWTAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITIMSFFLLAPVAIFM EGVKFTPAYLQSAGLNVKQVYTRSLIAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNSLGTGIALAGVFLYSRVKRIKPK TKEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	0	1
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	2.6	0.8963
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	5.2	0.8172
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	7.7	0.8726
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	8.9	0.8276
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	9.5	0.8608
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	11.3	0.8328
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	11.7	0.8526
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	12.4	0.8319
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	12.6	0.8626
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	14.3	0.8623

Compare expression of checked genes

Lus10002385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.