Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17490 152 / 9e-40 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 146 / 2e-37 GRAS RGL2 RGA-like 2 (.1) AT1G66350 144 / 7e-37 GRAS RGL1 RGA-like 1 (.1) AT2G01570 134 / 3e-33 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 130 / 6e-32 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G46600 124 / 2e-30 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 122 / 4e-29 GRAS SCL11 GRAS family transcription factor (.1) AT1G55580 119 / 1e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT3G54220 119 / 6e-28 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G63100 118 / 8e-28 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001451 [exp] 818 / 0 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10000140 [exp] 746 / 0 AT5G17490 86 / 8e-18 RGA-like protein 3 (.1) Lus10037758 [exp] 303 / 2e-95 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 303 / 4e-95 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 298 / 6e-93 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10036459 [exp] 280 / 1e-86 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037756 [exp] 272 / 1e-84 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 268 / 3e-83 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037753 [exp] 261 / 4e-80 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195600 [exp] 542 / 0 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 465 / 1e-158 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143700 [exp] 360 / 3e-117 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 346 / 5e-112 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 327 / 1e-104 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143200 [exp] 291 / 2e-92 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.010G143400 [exp] 286 / 1e-89 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.001G326000 [exp] 157 / 1e-40 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 140 / 5e-35 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G122400 [exp] 137 / 6e-34 AT1G63100 696 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10002424 pacid=23179438 polypeptide=Lus10002424 locus=Lus10002424.g ID=Lus10002424.BGIv1.0 annot-version=v1.0 ATGGCCCCGGTTGACAATCAAGATCACAGTGAAATCAATCGCCCAACTGGTAGCCAGATTAATCAACAAGAGGAGAATATGTTTTCCATGGAGGAATTGG GGCAGGTTTATCCACTAAAACCGGCCAGATCAACCGAATCGGTCATAAAAGGGCTGCAGCTGTTCAACGACATGTCTAGCAAGTTACAGCCACAATCTGA ACCTTCTTCCCACAACAACAACAACAACAACAAAGGTATGAGTTTCGAGGACTACCTTGTGTCATGTTTCCCTGCACCAGCGGCTGCACAACCGATGCAT GAGATCAAGCGGCTCGAGAACATTAGCAACAACCGCAACACTAGTTCTGGTACTAATACTAATAACAACGGCAGACTTTCGGCGTCGCTAGAGCTTCTTA ATAGCTACGGGAGCGGGTTTAGGAAGCTGGTCAATAACAACAACATTATTAACAACCAATCAGTAAATATGTCGACCGCATCGAAGCCTGGGGCGGAGGC CAATACGTACACTAGGAAGTTGTCGACAGAGGGAGTGATGAGGGTAGCCGGAGAGAGGTACATACAATTTTCGGAGCATCATAGGTGTGACGATTTCTCC ATACTCATGCACCCTTTCGGTTATGCCCTATCAGCGGGGCTATCAGAGGAAGAGACTAAAGACGTGGAGTTGGCCCACCTTCTCCTTGCTGCAGCGGAGA AGGTGGGGTTCCACCAATATGACCGTGCCAGCAAACTGTTGACGCGGTGCGAGTGGATCGCATCAGCTAGGTCCAACGCGGCCCAGAGGGTCGTGCATTG CTTTGCGGAAGCTCTCCGAGAGAGGATCGATCGAGGGTTGGGGAAATTCATTGTCAGGATGCCGGATCCCTACTCTTCCTTCAATTCCATCTACAATAAT GGATTAGGTACAAATCTGGCCTCCATTTGTCTACACCAAAAGGCACCATTCAGTCAAGTGATGCAAATGACAACCGTACAATCCATCATTGAAAACATAG GGACATCAGCTAGAAAGCTTCATTGCATCGACCTCGAGATCAGAAGCGGAGTGATATGGACAGCCTTGATGCAGGCTCTCGCGAACCGAGGTGCTGACTG CGTAATGGTTGAGCATCTCAGGGTGACGGCCATTGCTCGAATCTCGGAAAGATACCACGTGGAGGACACAGGGAGGCGGCTGGAGAGCTTTGCTAGGTCG ATGAACTTCCCTTTTAGTTTCCACGTTGTGTATGTTAACACATGCCTCAGCGATATTAGGGAGGATGTTTTTCGTGTTGCTTTCGACGAGACTGTGGTTG TTCGTTTGATGAGGGTACTAAAGCACCTGAATCCAACCCTAATGGTGGTGGGGGAAACCGAAGCCAACCACAACTCGCCTATATTCGTGAACCGGTTCAT CGAGTCATTGTTCTACTACAGCGCCTACTTCGACAGCCTGGAGACATGCATGTACGAGGACGTCGAATACAGGACGATAATTGAAGCCACTCTCTCCCAC GGGCTACGAAACATGGTGGCGATGGAAGGCAATGAGAGAACCTCGAGGAATGTGAAGCTCGAGGTGTGGAGAACCTTCTTCTCCACGAGGTTCAAGATGG TGGAGCTAGGGTTCAGCGAGACGTCGGCATACCAGGCTAGCTTGGTCATCAAACAATTCCAAGAATGGAGCTCTTGTAGCATTGACAAGGACGGTGAAGG ACTGACCATTGGATGGAAAGGGACGCCATTGTTCTCCCTTTCTGCTTGGAAGTTCTCTAGGGATAGGCTTGGGAGGTTCTTTAATTACCGATTCTTTTAG
AA sequence Show only first row Show all	>Lus10002424 pacid=23179438 polypeptide=Lus10002424 locus=Lus10002424.g ID=Lus10002424.BGIv1.0 annot-version=v1.0 MAPVDNQDHSEINRPTGSQINQQEENMFSMEELGQVYPLKPARSTESVIKGLQLFNDMSSKLQPQSEPSSHNNNNNNKGMSFEDYLVSCFPAPAAAQPMH EIKRLENISNNRNTSSGTNTNNNGRLSASLELLNSYGSGFRKLVNNNNIINNQSVNMSTASKPGAEANTYTRKLSTEGVMRVAGERYIQFSEHHRCDDFS ILMHPFGYALSAGLSEEETKDVELAHLLLAAAEKVGFHQYDRASKLLTRCEWIASARSNAAQRVVHCFAEALRERIDRGLGKFIVRMPDPYSSFNSIYNN GLGTNLASICLHQKAPFSQVMQMTTVQSIIENIGTSARKLHCIDLEIRSGVIWTALMQALANRGADCVMVEHLRVTAIARISERYHVEDTGRRLESFARS MNFPFSFHVVYVNTCLSDIREDVFRVAFDETVVVRLMRVLKHLNPTLMVVGETEANHNSPIFVNRFIESLFYYSAYFDSLETCMYEDVEYRTIIEATLSH GLRNMVAMEGNERTSRNVKLEVWRTFFSTRFKMVELGFSETSAYQASLVIKQFQEWSSCSIDKDGEGLTIGWKGTPLFSLSAWKFSRDRLGRFFNYRFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	0	1
					Lus10010827 [exp]	1.0	1.0000
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	1.4	1.0000
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	2.4	1.0000
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	2.8	0.9902
					Lus10005843 [exp]	3.9	1.0000
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	4.2	0.9756
					Lus10022511 [exp]	4.5	1.0000
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	4.5	0.9688
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	5.0	1.0000
					Lus10006063 [exp]	6.0	0.9421

Compare expression of checked genes

Lus10002424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.