Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47460 205 / 2e-63 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 199 / 2e-61 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT5G49330 197 / 2e-60 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT4G28110 178 / 3e-54 MYB ATMYB41 myb domain protein 41 (.1) AT3G02940 178 / 1e-53 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 178 / 2e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 177 / 4e-53 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 177 / 5e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G06180 174 / 8e-53 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT1G22640 173 / 2e-52 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001458 [exp] 549 / 0 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036336 [exp] 202 / 2e-62 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10016855 [exp] 199 / 7e-62 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10010273 [exp] 198 / 1e-60 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 188 / 2e-57 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10027459 [exp] 182 / 2e-55 AT3G61250 229 / 3e-74 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039214 [exp] 179 / 3e-54 AT3G61250 226 / 7e-73 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039743 [exp] 176 / 8e-54 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036472 [exp] 178 / 2e-53 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141000 [exp] 211 / 1e-65 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G198100 [exp] 206 / 3e-63 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 197 / 8e-60 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.015G143500 [exp] 181 / 6e-55 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.006G221800 [exp] 179 / 2e-54 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.007G093900 [exp] 180 / 3e-54 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 181 / 5e-54 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.012G140700 [exp] 178 / 6e-54 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.013G148600 [exp] 179 / 1e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 179 / 1e-53 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002435 pacid=23179441 polypeptide=Lus10002435 locus=Lus10002435.g ID=Lus10002435.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGCCATGCTGCGACAAGGAGGGTTTGAAGACAGGGAGATGGTCTGCAGAGGAAGACCAGCTTCTCGCCGGTTACATCGTTGCGAATGGTG AAGGCTCCTGGCGTTCATTACCCCAAAATGCTGGACTGAAGAGGTGCGGGAAGAGTTGCAGACTAAGGTGGGTTAATTACCTGAAATCTGATATCAAGAG GGGCAACATCTCCACCGCCGAGGCCGAAACCATACTCAACTTGCATACTTGTCTGGGCAACAGATGGTCTACAATAGCTAGTCAATTGCCGGGGAGAACC GACAATGAGATAAAAAACTATTGGAATTCACATTTAAGCAGAAATACTCACAGCTTCATAGGCCCAACTGCGCCCCAACCGAATTTGGCGACATTAGTAG CAGACATGGCCAAGGTTGTGACGACGGTGGTAGCCAATACAAAACGAGGAAGAAAAACAAATAACTCATCATCAAAGCGTACCAAGAATGACAAAACCAA CATATCAAAGGACACCCGTACAAATGTCGTCAGTGAGCCATCAGTGGTAGAGAAGGCCGTTGTTACAATCAATGGACCGGAGACAGGTCTAGCAACGACC ACAAAACATCCGTCACCAATAAGCTATATTAGCGACGAAACTACTTGTAGTGGAGTGATGAAAGTGCAGCAATACAATGCCTCATTAAGCTCGGCTACTG AAATCCCAGCATCTCCATGGGAAAAGTCCTTCCTCTATTATGAGCAATGGGACATGGACAAAGATTGGGATGATGTCGTGAGCTACTGTACTAAGACTTC GACCATGGATAGTACTGTCAACCAATTGATTGGTTGGTCGTGGGAATTGTACGCTGGTGATTGTGGTCTAGAAGCAGGAAGGCATAATGGAGTGCTGGAG TTTGATGACCGTGACAATGATGACAACGACAAGCAAACTGGCTTCGTAGATTGGCTTCTTTCCTGA
AA sequence Show only first row Show all	>Lus10002435 pacid=23179441 polypeptide=Lus10002435 locus=Lus10002435.g ID=Lus10002435.BGIv1.0 annot-version=v1.0 MGRKPCCDKEGLKTGRWSAEEDQLLAGYIVANGEGSWRSLPQNAGLKRCGKSCRLRWVNYLKSDIKRGNISTAEAETILNLHTCLGNRWSTIASQLPGRT DNEIKNYWNSHLSRNTHSFIGPTAPQPNLATLVADMAKVVTTVVANTKRGRKTNNSSSKRTKNDKTNISKDTRTNVVSEPSVVEKAVVTINGPETGLATT TKHPSPISYISDETTCSGVMKVQQYNASLSSATEIPASPWEKSFLYYEQWDMDKDWDDVVSYCTKTSTMDSTVNQLIGWSWELYAGDCGLEAGRHNGVLE FDDRDNDDNDKQTGFVDWLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	4.2	0.9191
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	5.0	0.9208
					Lus10042813 [exp]	9.5	0.9091
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	10.2	0.8907
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	10.4	0.9112
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	11.5	0.9178
					Lus10028788 [exp]	13.9	0.8706
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	14.9	0.8996
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	19.8	0.8922
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	22.5	0.8586

Compare expression of checked genes

Lus10002435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.