Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 132 / 3e-39 Cupredoxin superfamily protein (.1) AT2G26720 95 / 3e-24 Cupredoxin superfamily protein (.1) AT2G31050 87 / 2e-21 Cupredoxin superfamily protein (.1) AT2G32300 84 / 1e-19 UCC1 uclacyanin 1 (.1) AT4G31840 68 / 3e-14 AtENODL15 early nodulin-like protein 15 (.1) AT3G17675 66 / 3e-14 Cupredoxin superfamily protein (.1) AT3G27200 67 / 4e-14 Cupredoxin superfamily protein (.1) AT2G25060 65 / 5e-13 AtENODL14 early nodulin-like protein 14 (.1) AT3G20570 64 / 1e-12 AtENODL9 early nodulin-like protein 9 (.1) AT5G07475 62 / 3e-12 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010533 [exp] 246 / 6e-84 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 189 / 2e-61 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 184 / 3e-59 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 72 / 7e-16 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10006657 [exp] 74 / 2e-15 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10027143 [exp] 72 / 3e-15 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10038098 [exp] 72 / 9e-15 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10041570 [exp] 69 / 9e-15 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10019405 [exp] 71 / 1e-14 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089900 [exp] 157 / 5e-49 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 156 / 2e-48 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 111 / 3e-31 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 110 / 8e-31 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 109 / 2e-30 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 106 / 3e-29 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 106 / 3e-29 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 105 / 6e-29 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 93 / 8e-24 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 92 / 6e-23 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10002451 pacid=23168990 polypeptide=Lus10002451 locus=Lus10002451.g ID=Lus10002451.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGAGCAATTGGTTTGGCCACGGTGTTGTCAATGGCTGTTTTTCTGCAGCAAGTGATCCATGCCCATGGAGCAGCCGTACACAAGGTCGAGG CCTCCGCCGGTTGGACCACCATTGGAAGTCCCGATTACAAGCAGTGGGCTGCAACTAAATCCTTCCAGGTTGGCGACATTGTCCATAAGTCACTTTTTTC CTTTCCTTCTGTCTCGCACACCACCTCAACCACCCACATCATTTGGGAAGATACGTTCTTTTTCGTGATGAGAGTGACCCATGCCATGTACAGAGCATGC AATGCCTCTTCTCCATTGGCAACATTCACAACAGGGAACGATTCAGTCAGCATAAGTACCCGCGGCCACCACTACTTCATCTGCGGAGTCAAAGGCCATT GCCAGTCCGGTCAGAAGGTTGACATCAACGTCTTCCGCTCTTCATCTCCAGCTCCATCCTCCATGGCCGCCGCTCAAACTCCTGCACAATCCCCTGATCA TTCTGCAAATTCAGCTTCTTCTACATTTACATTCATGGCTCTCACTCAAGCAGCTGCTATTTCCCTCGCCTTCACTATCCTCGCCTCCGCTTGA
AA sequence Show only first row Show all	>Lus10002451 pacid=23168990 polypeptide=Lus10002451 locus=Lus10002451.g ID=Lus10002451.BGIv1.0 annot-version=v1.0 MAARAIGLATVLSMAVFLQQVIHAHGAAVHKVEASAGWTTIGSPDYKQWAATKSFQVGDIVHKSLFSFPSVSHTTSTTHIIWEDTFFFVMRVTHAMYRAC NASSPLATFTTGNDSVSISTRGHHYFICGVKGHCQSGQKVDINVFRSSSPAPSSMAAAQTPAQSPDHSANSASSTFTFMALTQAAAISLAFTILASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10002451 [exp]	0	1
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	12.2	0.7166
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	12.7	0.7777
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	25.7	0.7679
AT3G57500			unknown protein		Lus10012197 [exp]	26.8	0.6646
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	27.9	0.7660
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027330 [exp]	29.7	0.7667
AT3G56130			biotin/lipoyl attachment domai...		Lus10017424 [exp]	37.1	0.7623
AT5G49170			unknown protein		Lus10022872 [exp]	39.6	0.7489
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	41.0	0.7119
AT2G40435			unknown protein		Lus10025257 [exp]	41.4	0.7232

Compare expression of checked genes

Lus10002451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.