Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01060 169 / 3e-51 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 155 / 4e-45 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 145 / 5e-41 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT1G69580 140 / 1e-39 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 140 / 2e-39 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT5G18240 138 / 3e-38 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 137 / 3e-38 GARP Homeodomain-like superfamily protein (.1.2.3) AT3G24120 132 / 7e-37 GARP Homeodomain-like superfamily protein (.1.2) AT3G04450 134 / 1e-36 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 130 / 2e-36 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004809 [exp] 523 / 0 AT2G01060 171 / 5e-52 myb-like HTH transcriptional regulator family protein (.1.2) Lus10005036 [exp] 324 / 8e-113 AT2G01060 175 / 4e-54 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027806 [exp] 322 / 7e-112 AT2G01060 172 / 6e-53 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 164 / 3e-49 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10038734 [exp] 155 / 8e-46 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024938 [exp] 149 / 9e-42 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 144 / 6e-40 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10008197 [exp] 143 / 6e-40 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 140 / 6e-39 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G101000 [exp] 347 / 1e-121 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G117000 [exp] 335 / 7e-117 AT2G01060 173 / 4e-53 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 170 / 4e-51 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 168 / 9e-51 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 147 / 2e-41 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 143 / 3e-40 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G032700 [exp] 143 / 3e-40 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.014G000700 [exp] 140 / 6e-39 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.013G060200 [exp] 139 / 2e-38 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.013G048000 [exp] 139 / 3e-38 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002483 pacid=23170164 polypeptide=Lus10002483 locus=Lus10002483.g ID=Lus10002483.BGIv1.0 annot-version=v1.0 ATGGGTTCCAGCCGCTCTGATGGCGCTACCAATAAGGAGCGACTGCGGTGGACTCAAGAGCTACATGACCGGTTTGAAGAAGCTGTCAACCAGCTTGGTG GCCCTGACAGAGCCACTCCCAAGGGTATCCTCAAGGCCATGGGCATTCCTCGACTCACCATCTATCATGTCAAGAGCCATTTGCAAAAATACAGGATCTC GAAATTTATCCCAGAAACACCCAACAGAGGGATGGAAAGAAGGAACATTTCTGAGATGCTACCAAATTTCAGTGCCACCTCAGGAGCTCAACTCAACGAA GCATTGCAAATGCAGCTGGAAGTCGAAAGGCGCCTCAGCGATCACCTTGATGTTCAGAGGAACCTGAAGCTGAAAATAGAAGCGCAGGGGAGGTTCCTGG AGAGGATGGTGGAAGAACACAAGAACAGAGCTGCTGCTTTCTCCAAGACAAAGCTGTTCCCAACCATGTCAATGCCATCTCTCTGCGACGAGTCCGAGTC AAACAACGATAAGGGAGACGAGTCCGATTCGGAAGGGGAACGGGTTGAAGTTCAGTCTGGTGAGGTTTTCAGGGCTCTGAAGCGACTCAGAACGGACAAC GACGTCGTTCTGCCACCTCGTTACAAGATTGTCGGTCCGGCTGCGGAGCCCTTAGTTAAGAACATGATGTATGTCCAGAAAGATGCCAAGTTCTCGTACC CGACTCAAGGGATCAACTTTGCGTGGAACAACATGGCCTCTTCCTGTCCTTCGCCATTGGTCCCTAGCTATTTCTGA
AA sequence Show only first row Show all	>Lus10002483 pacid=23170164 polypeptide=Lus10002483 locus=Lus10002483.g ID=Lus10002483.BGIv1.0 annot-version=v1.0 MGSSRSDGATNKERLRWTQELHDRFEEAVNQLGGPDRATPKGILKAMGIPRLTIYHVKSHLQKYRISKFIPETPNRGMERRNISEMLPNFSATSGAQLNE ALQMQLEVERRLSDHLDVQRNLKLKIEAQGRFLERMVEEHKNRAAAFSKTKLFPTMSMPSLCDESESNNDKGDESDSEGERVEVQSGEVFRALKRLRTDN DVVLPPRYKIVGPAAEPLVKNMMYVQKDAKFSYPTQGINFAWNNMASSCPSPLVPSYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10002483 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	10.4	0.7915
AT1G59970			Matrixin family protein (.1)		Lus10037418 [exp]	18.4	0.7403
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	21.7	0.7899
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	35.6	0.7865
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	35.6	0.7922
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	40.7	0.7306
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	65.5	0.7756
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	67.2	0.7841
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	86.9	0.7746
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	89.8	0.7656

Compare expression of checked genes

Lus10002483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.