Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75250 112 / 2e-33 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT4G39250 103 / 2e-30 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G19510 102 / 4e-30 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G21650 102 / 5e-30 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT2G18328 84 / 4e-23 MYB ATRL4 RAD-like 4 (.1) AT4G36570 82 / 3e-22 MYB ATRL3 RAD-like 3 (.1) AT5G58900 79 / 3e-19 MYB Homeodomain-like transcriptional regulator (.1) AT5G05790 77 / 2e-18 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 73 / 6e-17 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT2G38090 72 / 2e-16 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007152 [exp] 179 / 2e-60 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 155 / 1e-50 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 155 / 2e-50 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 109 / 1e-32 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10041752 [exp] 108 / 1e-32 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 107 / 3e-32 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040453 [exp] 107 / 5e-32 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10014301 [exp] 107 / 1e-31 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 105 / 3e-31 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035000 [exp] 136 / 2e-43 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 123 / 2e-38 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G122200 [exp] 113 / 1e-34 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 110 / 1e-33 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 111 / 2e-33 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 110 / 2e-33 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 105 / 2e-31 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155400 [exp] 105 / 3e-31 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 97 / 9e-28 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025100 [exp] 92 / 4e-26 AT1G75250 91 / 1e-25 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002538 pacid=23157294 polypeptide=Lus10002538 locus=Lus10002538.g ID=Lus10002538.BGIv1.0 annot-version=v1.0 ATGGGATCAAGATACCTTCCTTCTCATGGTTCTGGCTCATCGTGGACACCAAAGCAAAACAAGCTGTTTGAGAGGGCACTCGCAGTGTACGACAAGGACG CCCCTGACCGCTGGCAAAACGTGGCCCGGGCTGTGGGTGGTAAGTCTGCAGAGGAAGTTAAGAGGCACTATGATCGTCTGGTGGCGGATCTCATGTTCAT AGAATCAGGTCAAGCTCCTCTTCCAAATTACAACAACCCTGTAAACAGCGGAGGAGGTAGAGTATTTGCTGAACAACAGAGGTAA
AA sequence Show only first row Show all	>Lus10002538 pacid=23157294 polypeptide=Lus10002538 locus=Lus10002538.g ID=Lus10002538.BGIv1.0 annot-version=v1.0 MGSRYLPSHGSGSSWTPKQNKLFERALAVYDKDAPDRWQNVARAVGGKSAEEVKRHYDRLVADLMFIESGQAPLPNYNNPVNSGGGRVFAEQQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	0	1
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	3.7	0.9391
AT1G79060			unknown protein		Lus10031795 [exp]	4.9	0.9316
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008533 [exp]	6.9	0.9155
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	8.9	0.9234
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	9.0	0.9283
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	11.2	0.9139
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	14.5	0.9078
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	14.6	0.9237
AT1G79060			unknown protein		Lus10031218 [exp]	15.2	0.9089
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10008662 [exp]	15.6	0.8385

Compare expression of checked genes

Lus10002538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.