Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG01280 780 / 0 ATCG01280.1, YCF2.2 Chloroplast Ycf2;ATPase, AAA type, core (.1) ATCG00860 780 / 0 ATCG00860.1, YCF2.1 Chloroplast Ycf2;ATPase, AAA type, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007142 [exp] 226 / 2e-68 ATCG01280 95 / 2e-23 Chloroplast Ycf2;ATPase, AAA type, core (.1) Lus10026434 [exp] 71 / 8e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G143400 [exp] 820 / 0 ATCG01280 3894 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1) Potri.019G028400 [exp] 714 / 0 ATCG01280 928 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05695 [flax] [poplar] DUF825 Plant protein of unknown function (DUF825) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10002548 pacid=23165486 polypeptide=Lus10002548 locus=Lus10002548.g ID=Lus10002548.BGIv1.0 annot-version=v1.0 ATGATTCATCAGCCACCATTGATATGGACACATCTGATATCCCCAAATGTTGGGGAGTTGGTCTATTCAACCGTTTTCCTTCTTCTTGTTGCTGGATATC TCGTTTGTACACATCTTCTCGTTACTTCCCGAGCCTATATTGAGTTACCGACAGAGTTCGAAAAGGTCAAACCCTTGATGATTCCATCATACATGATTGA GTTACAAAAACTTCTGGATAGGTATCCTCCATCTGAACGGAATTCTTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTTTCTAGAAGAA ATACGCAACATGCTGTGGGGTGGTGGTCCCGCTTATGGGGTCAAATCAATACGCTCTAATAAGAAATTTTGGAATATCAATCTCATCGATCTCATAAGTA TCATACCAAATCCCATTAATCGAATCACTTTTTCGATAAATACAAGACATCTGAGCCATAGAAGTAAGGCTCTTTTTTGGTTTCTAATAAAAAAAAAAAA CGTGAACAGTGATTGGATTGATGATCCAATAGAATCCTTTATCGCGACCAGTGAGTTGGTTGAGGATAAAGAAAGAGATTTATTCCGTCATTTCGTCACC TTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCCGGTTATCAAATGATTGAAGAGCCGG GAGCAATTTACTTACGATCCTTAGTTGACATTCATAAAAAGTTTCTAATGAATTATGAGTTCAATGCACTCTGTTTAGCGGAAAGACGTATATTTCTTGC TCATTATCAGACAATCACTTATTCAGAAACCTCGTGTGGGGCGAATAGTTTTCATTTCCGAAAACCTTTTTCGCTCCGCTTAGCCCTATCCCCCTCTAGT GGTATTTTATTGATAGGTTCTCTAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGGCAAACTCCTATCTTCCTTTAATTAGGGTATTTCTGAACA AGTCAACGGTTAACCAGTATAAGTTTCGGGATTTGCCTATGGATGAGGATTTTTGTGAGGATTTTGATTTCGATAGTGATGACGCTATTGATGTTCGTGA GGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGAT ATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTG ATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGA GGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGAT ATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGAGGATATTGATGTTCATGATATCATCTTTGATA CGGAGTGGGAGACTCGAAAGAGCATGAATATGTATATGATGCCGGAACTAGACAAAATTTATATCGCCCTTCAATTCCAATTCGCAAAAGCAATGTCTCC TTGCATAATATGGATTCCAAACATTCATGAGCTGGATGCGAAGGAGTCGAATTACTTATCCCTGGGTCTATTAGTGAAACATCTCTCCAGGGATTGTGAA AGATCTTCCACTCAAAATAGTCTTGTTATTGCTTCGACTCATATTCCGCAAAAAGTGGATCCCGCTCTAATAGCCCCGAATAAGTTACATACATGCATTA AGATACGAACACTTCTTATTCCACAACAACGAAAGTTGTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGCTCCATACTAAGGG ATTCGGGTCCATACGCATGGGTTCCACTATAGAAGATGTTGTAGCACTTACTAATGCGGCCCTATCAATTAGTATTACACAGAAGAAATCAATGGTAGAC ACTAATATAATTCGATCTGCTCTTCATAGACAAACTTGGGAGTTGCGAGGCAAGGTAAGATCGGTTCAAGATCATGGGATCCTTTTCTATCAGATAGGAA GGGCTCTTGCACAAAATCTATTTCTAAGTAATTCCCCCATTGATCCTATATCGATCTATATCAAGAAGAATTCATGTGAGGTAGAGGAACCTTATCTGTA CAAATGCTACCGCGAACTTGGAATGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGACCGGTTGCTCAAGACCTTTGGTCT CTACCCGGATCCGATGAAAAAAGTGGGATCGCTTGGTATAAACTTGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAGCTAGAAGGCGCTCTGG TGGGATCCTCACAGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGCCATTGCTTCGTCGGCCCGAACCAAGGAGTCCCTTAGATATGATGAA AAATGGATCTTTTTCTATCCTTGAAAAGAAATTTATCTACGAATCGGTGTTTGAACAACAAGCGGCGGAAGAAGAAGGAGCCCTCGACCCGCTACAGATA GTAGCGGAGGATTTATTCACTGACATAGTTTGGTCTCCTAGAATATGGCGCCCTTGGGTCGTTCTATTTGATTGTATCGAAAGGCTCAATGAATTAGGAT TTCCCTATGGGTCCAGGTCATTTCCGGGCAAGGGGAGCATTTATGATGAGATTTATGATGAAGAGGGTGATCTTCAAGAGAAGGTTGAAGAGGATGATCT TGATGACATTTATGAGAAATTTATGAAGGGTGATCTTCAAGAGAATGATGAAGAGGATGAGCTTCAAGAGAATGATGAAGAGTTCTTGCAGAGTGGAACC ATGCAGTACCAGATGCGAGATGGATCTGCCAACGAACGGGGCTTTTTTCGAATAAGCCAATTCGTTTGGGATCCTGGAGATCCACTCTTTTTCCTATTCA ATGATGAGCCCTCTGTCTCTGTGTTTTCAAATCGAGAATTCTTTGCAGCAGATGAAGAGATGTCAAAGGGGCTTCTTCTTACTTCCCTAGAAGAGCCTTC ATCATCTATGTATAAACGTTGGTTTATCAAGGATATGCAAGCAAAGCACTTCGAGTTCTTGATTGATCGCCAGAGATGGCTTAGAACCAATAGTTCATTA TCTAATGAATGTTTCCGCTCGAAGACTCTATCCGAGAGTTATCAATATTTATCAAATCTCTTCCTATCTAACGGAAGGCTATTGGATCAAATGGCAAAGG CATTGTTGAGAAAAAGAAGCGGATGTTCCTTTTTTTAG
AA sequence Show only first row Show all	>Lus10002548 pacid=23165486 polypeptide=Lus10002548 locus=Lus10002548.g ID=Lus10002548.BGIv1.0 annot-version=v1.0 MIHQPPLIWTHLISPNVGELVYSTVFLLLVAGYLVCTHLLVTSRAYIELPTEFEKVKPLMIPSYMIELQKLLDRYPPSERNSLKNLFLVALEQLGDFLEE IRNMLWGGGPAYGVKSIRSNKKFWNINLIDLISIIPNPINRITFSINTRHLSHRSKALFWFLIKKKNVNSDWIDDPIESFIATSELVEDKERDLFRHFVT LTTEKRIDQILLSLTHSDHLSKNDSGYQMIEEPGAIYLRSLVDIHKKFLMNYEFNALCLAERRIFLAHYQTITYSETSCGANSFHFRKPFSLRLALSPSS GILLIGSLGTGRSYLVKYLAANSYLPLIRVFLNKSTVNQYKFRDLPMDEDFCEDFDFDSDDAIDVREDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDED IDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDEDIDED IDEDIDEDIDEDIDEDIDEDIDEDIDVHDIIFDTEWETRKSMNMYMMPELDKIYIALQFQFAKAMSPCIIWIPNIHELDAKESNYLSLGLLVKHLSRDCE RSSTQNSLVIASTHIPQKVDPALIAPNKLHTCIKIRTLLIPQQRKLFFTLSYTRGFHLEKKMLHTKGFGSIRMGSTIEDVVALTNAALSISITQKKSMVD TNIIRSALHRQTWELRGKVRSVQDHGILFYQIGRALAQNLFLSNSPIDPISIYIKKNSCEVEEPYLYKCYRELGMSMKKLTILLYLLSCSAGPVAQDLWS LPGSDEKSGIAWYKLVENDSDLVHGLLELEGALVGSSQTEKDCSQFDNDRVPLLRRPEPRSPLDMMKNGSFSILEKKFIYESVFEQQAAEEEGALDPLQI VAEDLFTDIVWSPRIWRPWVVLFDCIERLNELGFPYGSRSFPGKGSIYDEIYDEEGDLQEKVEEDDLDDIYEKFMKGDLQENDEEDELQENDEEFLQSGT MQYQMRDGSANERGFFRISQFVWDPGDPLFFLFNDEPSVSVFSNREFFAADEEMSKGLLLTSLEEPSSSMYKRWFIKDMQAKHFEFLIDRQRWLRTNSSL SNECFRSKTLSESYQYLSNLFLSNGRLLDQMAKALLRKRSGCSFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10002548 [exp]	0	1
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	1.0	0.9725
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	2.2	0.9488
					Lus10004082 [exp]	2.4	0.9647
					Lus10026434 [exp]	3.0	0.9561
AT2G07675			Ribosomal protein S12/S23 fami...		Lus10002330 [exp]	8.5	0.9491
AT5G24350			unknown protein		Lus10007768 [exp]	8.9	0.9457
					Lus10002716 [exp]	9.2	0.9187
AT5G36000			unknown protein		Lus10035747 [exp]	9.4	0.9057
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	9.5	0.9338
					Lus10000297 [exp]	12.0	0.9244

Compare expression of checked genes

Lus10002548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.