Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12870 214 / 3e-67 MYB ATMYB46 myb domain protein 46 (.1) AT3G08500 204 / 5e-63 MYB ATMYB83 myb domain protein 83 (.1) AT1G57560 192 / 1e-58 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 189 / 6e-57 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 184 / 2e-56 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G13890 187 / 3e-56 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G09540 187 / 3e-56 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT1G63910 175 / 3e-51 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 170 / 4e-50 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT5G14750 161 / 4e-48 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027369 [exp] 575 / 0 AT5G12870 218 / 5e-69 myb domain protein 46 (.1) Lus10031850 [exp] 275 / 3e-90 AT3G08500 224 / 1e-70 myb domain protein 83 (.1) Lus10031281 [exp] 246 / 4e-79 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10029520 [exp] 214 / 5e-66 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10039610 [exp] 214 / 5e-66 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10038022 [exp] 185 / 2e-54 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 183 / 2e-54 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10019707 [exp] 180 / 4e-54 AT3G08500 184 / 2e-56 myb domain protein 83 (.1) Lus10038395 [exp] 168 / 1e-49 AT3G12720 233 / 2e-75 myb domain protein 67 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053900 [exp] 259 / 2e-84 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.001G258700 [exp] 235 / 7e-75 AT5G12870 219 / 4e-70 myb domain protein 46 (.1) Potri.009G061500 [exp] 226 / 3e-71 AT3G08500 224 / 6e-71 myb domain protein 83 (.1) Potri.001G267300 [exp] 224 / 8e-71 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.013G001000 [exp] 192 / 4e-57 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 190 / 2e-56 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.012G084100 [exp] 187 / 6e-56 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 186 / 1e-55 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.001G197000 [exp] 185 / 2e-55 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.014G111200 [exp] 186 / 2e-54 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002559 pacid=23165497 polypeptide=Lus10002559 locus=Lus10002559.g ID=Lus10002559.BGIv1.0 annot-version=v1.0 ATGAGGAAGCCAGAGGCCAAGACCACTAGTAGTAACAGTAGTACTACTACCAAGGTGAGAAAAGGGCTTTGGTCGCCTGAAGAAGATGAGAAGCTGATGA ACTACATGATGAGCAATGGACAAGGGTGCTGGAGTGATGTTGCTAAGAATGCTGGCTTGCAGAGATGTGGAAAGAGCTGTCGTCTCCGCTGGATCAACTA CCTTAGGCCCGACCTCAAGAGAGGTGCTTTCTCCTCTCAGGAAGAGGACCTCATCGTCCACCTACATTCCCTTCTCGGTAACAGGTGGTCACAAATTGCG GCTCGTATGCCAGGAAGGACCGACAACGAGATCAAGAACTTCTGGAACTCGACCATCAAGAAACGACAAAAGAGCATGTCTTCTTCCTCTACCTCGCCAA ACACAAGTGACCATTCGTCCATGGAACCTAACAAAGATCATACCATGGGGGTACCACCTCCTAATTCATTATCATCAAGGACAATATTCATGGAGCCACC CATGTTCATCGACGAATCTTCATTGACATCGTTACAGATCCTCGAGGATCAACAATATCATCACCACCACCATGGTTTGATGAACATGTATGGCCATGCA AATCCATACTTGATGGCTCCTCTTGCTTCCATGGTTGATGATCACCATGGTGTTTCATCATATGGATTGGATCAAGGTTTTTTCGAGAAGGATATTCAAG TACTCCCACCTTTAACTGAAAGCATGGCCATCGATGGTGCCCACGACAATATCAGGTGTACTAACCATGGACGTTATTCACGTGATCAGTCTGAGTTTGC CTCTACTATGCCATCTAGCGTATCAGACTTCCTAGTCGCGAAGCACAACATTGATGTTAGCACCAACAACAACAAGTACCAAATGCTGAATAGTACCAAC AACAAGTACCAATTGTTGAATGGTACCAACAACAACATGTCCAATAACAAGATAAAAAACAACATCATGGGTAGCTTTTGGCAAGGAGATCATCAAATTC AAGACCATGTACTAAGTAGTACTAAAGTTGGGGAATGGGACTTTGAGGAGCTCATGAAAGATGTCTCCTCCTTCCCTTTTCTTGACTTCCAAAATTAG
AA sequence Show only first row Show all	>Lus10002559 pacid=23165497 polypeptide=Lus10002559 locus=Lus10002559.g ID=Lus10002559.BGIv1.0 annot-version=v1.0 MRKPEAKTTSSNSSTTTKVRKGLWSPEEDEKLMNYMMSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEEDLIVHLHSLLGNRWSQIA ARMPGRTDNEIKNFWNSTIKKRQKSMSSSSTSPNTSDHSSMEPNKDHTMGVPPPNSLSSRTIFMEPPMFIDESSLTSLQILEDQQYHHHHHGLMNMYGHA NPYLMAPLASMVDDHHGVSSYGLDQGFFEKDIQVLPPLTESMAIDGAHDNIRCTNHGRYSRDQSEFASTMPSSVSDFLVAKHNIDVSTNNNKYQMLNSTN NKYQLLNGTNNNMSNNKIKNNIMGSFWQGDHQIQDHVLSSTKVGEWDFEELMKDVSSFPFLDFQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	1.4	0.9827
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	4.0	0.9738
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	6.6	0.9440
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	7.2	0.9628
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	9.8	0.9643
AT1G21510			unknown protein		Lus10028651 [exp]	9.9	0.9554
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	10.0	0.9626
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	11.3	0.9546
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	11.6	0.9511
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10028902 [exp]	12.2	0.9518

Compare expression of checked genes

Lus10002559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.