Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 282 / 1e-93 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 271 / 1e-89 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 249 / 7e-82 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 235 / 4e-75 MYB ATMYB93 myb domain protein 93 (.1) AT5G16770 234 / 6e-75 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 231 / 5e-74 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 225 / 1e-71 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G54230 219 / 1e-69 MYB ATMYB49 myb domain protein 49 (.1) AT5G10280 217 / 2e-68 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G01140 218 / 4e-68 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018418 [exp] 506 / 0 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 272 / 5e-90 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 271 / 5e-88 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 244 / 2e-80 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 223 / 7e-70 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10041142 [exp] 219 / 3e-69 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 218 / 4e-69 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10026620 [exp] 214 / 1e-67 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10030378 [exp] 213 / 3e-67 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041600 [exp] 289 / 5e-96 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 283 / 7e-94 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 263 / 6e-86 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.001G408700 [exp] 255 / 4e-83 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 254 / 2e-82 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 241 / 9e-78 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 229 / 3e-73 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 228 / 2e-72 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.005G074500 [exp] 226 / 6e-72 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.002G096800 [exp] 223 / 7e-71 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002593 pacid=23177077 polypeptide=Lus10002593 locus=Lus10002593.g ID=Lus10002593.BGIv1.0 annot-version=v1.0 ATGGGAAGATCACCTTGTTGTGAGAAGAATGGCTTGAAGAAAGGTCCATGGACTTCCGAGGAAGATGAGAAGCTCATGGACTACATCCGCGACCACGGCT ACGGCAATTGGCGCACCCTCCCCAAGAATGCCGGGTTGCAACGATGTGGTAAGAGCTGTCGTTTGAGGTGGACGAATTACCTCAAACCTGATATCAAAAG GGGTAGGTTCTCGTCGGAAGAGGAAGAGGTTATTATTCAGCTGCATAGTGTTCTCGGGAACAAGTGGTCGGCGATTGCTACTAGGTTATCAGGAAGGACT GACAACGAGATTAAAAATTATTGGAATACTCACATTAGGAAGAAGTTGCTGAGAATGGGAATCGACCCGGTGACTCACAGCCCACGGCTCGATTTGTTGG ACCTCTCGTCGATTTTGAGCTCGTCCTTCTCTTCTTCTTCCCATCTTATGAACTTCTCGGGTATGGTCGATGGGGTGGTCCAACCGTTGATCAACCCTGA AATCCTACGACTCGCCGCTTCCCTCTTCTCCACTTCACGAGGAGCAGCACAACCCGAAAACCAAAACCTCATCTCGTCGAACCAATCATGGGTCCAACCG GTTGGACACCAGCTTCATCAAGAGCTGACTACAACCACAACTACTTCTGCAAATATGCAATGTGGCCAATTCTCAGCCGTAGATGCACAGTCCGTGGTCC CCACGGATTGGCAGAGTAATTACACGGACGGATATGATCTTCATAATGGGGTACAACAACCGGGACATTACAACTACGGGTCGTCGGTGGCCCCGTCGAC GGAGTTTGGGGTGCCGCCGTCGTCGGTTTTATCCACGCCGTCGTCGAGTCCGACGCCGTTGAATTCGAACTCGACTTACAATAATTGGAACAGCAGTACG GAGGACGAGAGAGATAGCTATTGTAGTGATGTGTTTAGGTTTGAAATTCCTGACGGTATTTTGGACGTTAGTAATTTCATGTAA
AA sequence Show only first row Show all	>Lus10002593 pacid=23177077 polypeptide=Lus10002593 locus=Lus10002593.g ID=Lus10002593.BGIv1.0 annot-version=v1.0 MGRSPCCEKNGLKKGPWTSEEDEKLMDYIRDHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLKPDIKRGRFSSEEEEVIIQLHSVLGNKWSAIATRLSGRT DNEIKNYWNTHIRKKLLRMGIDPVTHSPRLDLLDLSSILSSSFSSSSHLMNFSGMVDGVVQPLINPEILRLAASLFSTSRGAAQPENQNLISSNQSWVQP VGHQLHQELTTTTTTSANMQCGQFSAVDAQSVVPTDWQSNYTDGYDLHNGVQQPGHYNYGSSVAPSTEFGVPPSSVLSTPSSSPTPLNSNSTYNNWNSST EDERDSYCSDVFRFEIPDGILDVSNFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	1.4	0.9063
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	2.4	0.8998
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	4.6	0.8490
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	4.9	0.9005
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	7.5	0.8968
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	9.2	0.8628
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	12.4	0.8024
AT1G47980			unknown protein		Lus10037797 [exp]	12.8	0.8611
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	14.8	0.8844
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	15.5	0.8492

Compare expression of checked genes

Lus10002593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.