Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 326 / 7e-96 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 275 / 1e-76 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G58390 182 / 4e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 178 / 5e-46 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58400 174 / 1e-44 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 164 / 4e-41 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58410 152 / 1e-37 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 149 / 2e-36 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 149 / 2e-36 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 144 / 7e-35 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 1211 / 0 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 1151 / 0 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 1116 / 0 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 1089 / 0 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 942 / 0 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10029705 [exp] 401 / 3e-132 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 338 / 9e-99 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 330 / 1e-96 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 327 / 4e-95 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121876 [exp] 559 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 551 / 0 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 543 / 1e-178 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 537 / 5e-176 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 527 / 8e-173 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 518 / 2e-168 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 516 / 7e-168 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 489 / 3e-158 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 481 / 4e-156 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 464 / 8e-150 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10002609 pacid=23168833 polypeptide=Lus10002609 locus=Lus10002609.g ID=Lus10002609.BGIv1.0 annot-version=v1.0 ATGGTTGCTCAGATTGTTTCCTCAATCATCGGCCAGTTGGGGTCCGTCCTGACCGAAGAGCTGAAGCGAAGAGGGAAGCTTGTCGCAGGTGCGCAGAGAG ACGTGGAAAAGCTCGCGTCCACGTTCTCCGCCATTGAAGCTCTGTTGTTGGATGCTGAGGAGAGACAGCTTAGTAATAAAGCTATCGAAGACTGGGTGAC GAAGCTCAAGAATGTGTGCTATAAGATCGAAGATGTGCTGGACGAGTGGAGAACCGACATCCTCAAGCGTCGGCTTGACGATGAGGGGGATGACAATGCA AGGAACTACCGCTGGTTGGAGTGGAAGCTGGCTGAAATCTCCGGTCTGCTTAAACGAGTATGTTCATTTCTTCCGACTTACTGTTTCTCGCCTAACGAAA TTGGTATTCGCTATAGCATTGCATCTAGGATCGGAAAACTGTATGAAGATCTTGAGAGCGTAGATAAAGATAAAAATATGTTCAATTTTACTGCAAAGTC AGCTGTAAGATTCAAGAGTCTGGAAACTAGCTCCATCATCAAATTCTCAGATGTGAAAGGCAGAGAGGAAGAGACAGAGTTGTTAAGGGAGAAGTTGCTA CGAGTTAGCGACGATGTTCAAAGTATCTCTATCCAAGGGACCGGTGGACTTGGAAAAACCACATTAGCAAAACTACTCTACAACGATGAAGCAGTGAGAG ATCATTTCCAGAAGAGAATTTGGGTTTGCGTGTCCGACACTTTTGACCCGATAACGGTTGCTAAAACTTTATTCCAATCTCTTACCGGCTATGCTCCGCG GAGTAACACATTGTCGATCATGCTGGAGGAAATAAGTGAGAAGATTGGAGTCATGAGGTTCCTTCTAGTTCTGGACGATGTGTGGGAAGATAGTTGGAGC AAATGGGAAGAACTAAAGACAGTTCTCTCGTGCAACTCACTAGGGAGCAAGATCTTGGTGACGACACGTAAAGGAGAGGTTTCTCGTGCATTAGGTTGTG TCGAAGATGATGTGCTTCTGATTGGAAAGGTGCCAGAAGATGTATGTCGAGCTATTTTTGCTCAGGTTGCATTTCATGGATGGAATGCAAAAGAGAAAGA AGGTGTGGAAGATTTATGTAAAAATGCGGTTGAAAAATGTGATGGCTCGCCACTGGCTGCAAAAGTTTTAGGAGGAGTCATGCAGGCAAAAAGAAGTAAG AGTGAATGGCAAAGACTCCTAACGAGTGAAATGTGGCACTTGGATAAAGTCAAAGAAGAAGTCTTTGGTCCTTTGGCACTGAGTTATTATGATTTGCCGG CGGAGCTAAGGCAGTGCTTTCAATTTTGCGCCGTCTTTCCAAAGGATTATGAAATGGAGAAGGAACAGTTAATCAAGTTGTGGATATCTCAAGGTTTTGT TGGAGAAAGAGGAAAGCAAGACGTGGAGGATATTGGAGAAGAGTACTTCCAAATCTTAGTCGCGCGTTCCTTCTTTCAAGATGTTCACAAATTTACAGAA GTCGGAAGAACGAGAACAACGTACTGTAAGATGCATGATTTGGTACATGATTTTGCACAAATGCTAAGTAACGGTGAATGTGTTAGCATGACAAGCAAAG ACACAAGGGATGGAAATCATAGTGTGGTCCGCAATTTGATGATAGATTACGGATCGCCAGATTACGACTCACCGGAGAGTCTTTCCATCAATAGTAGCCG CTTCTATTTCTCGAAGGATTTACGTGGTTTCATGGCAAAGTCCTTACAGAATATGGAACCTGGTGAGTGGGGTCATTTGTGTGGCATAAGGTCCTTGGTT CTCATTGATAGTCAGCTCAACATAATCCCTTCGACTATGGGTCAGTTGATCCATATGCGGCAGTTGGATTTGTCCAGCAATCGGAGATTGGAAGAGTTGC CTGACGAAATATGCGAACTTTACAACTTATGGGTACTTAGCATCAACCGGTGTTTTAAATTGGTGAGACTGCCTCTTGAAATGGGGAATAAACTAGTGAA TCTAAAGCATCTCGAAAACGAGGGAGTACCTGCACCCGTCCCCGAATCGATCAGGCGATTAAACCGTCTCAAGACATTAACGGAGTTTGTAATCCGCCCG AAACATCAACGAGGAGGAGGAGCCTCAATTGCCGATCTCAAGGACATGAACCAACTCCAAGGAATTCTTCGTGTGGTTGGTCTAAGTCATGTGGCAGAGA GTTATGAGGTGGAACAAGCTAATTTCGCCGAAAAAACAGGGCTAACCTGTTTACTTCTCATATTTCAAGATGCTAATAGAGAAGAGTATTATTATGAAGA CAGTAGTGGAAATAAGGATGAAGAATTGTTGGAAGCTGTAAGACCATCGACAAACTTGGAAGAAGTAATTATACGACAGTATATGGGCACGTCCATATCC CCGGCCTGGATGGCATCACTCTCTAACCTAACCGCACTTACGTTTCGAGGTTGCAACGAGGTGAAGTATCTACCTCCGCTAGGGGGTCTGCGGTCTCTCG AAATGCTGTCGTTCATGGAAATGGGCAAAGTAAATAAACTAGGCGTTGAGCTTCTAGGACACCATCATGAGCAACAACAATTGCAACATGATGTTGGGGC ATTTCCGAGGCTGCGGTTTCTCAAATTCTTTTCCATGTCGGAGTGGGAAGAGTGGGACGATACCTTGCTATCCTCGCCATCAGTGATGCCTCGGCTAAGT TGCTTAATTTTTCTCGACTGCAATCAGCTGAAGAAGTTGCCCGATGCAATTCTCCAGAAACCCACACTCGAAAGGCTAGATGTGAATTATTGCGACAGTC TGCAAAGTAACATGAGCTTGGACAAAATCTCTCACATCCCCACCGTCATAGTTAACGAAGTCCAAGTTCGAACCGACAAATAA
AA sequence Show only first row Show all	>Lus10002609 pacid=23168833 polypeptide=Lus10002609 locus=Lus10002609.g ID=Lus10002609.BGIv1.0 annot-version=v1.0 MVAQIVSSIIGQLGSVLTEELKRRGKLVAGAQRDVEKLASTFSAIEALLLDAEERQLSNKAIEDWVTKLKNVCYKIEDVLDEWRTDILKRRLDDEGDDNA RNYRWLEWKLAEISGLLKRVCSFLPTYCFSPNEIGIRYSIASRIGKLYEDLESVDKDKNMFNFTAKSAVRFKSLETSSIIKFSDVKGREEETELLREKLL RVSDDVQSISIQGTGGLGKTTLAKLLYNDEAVRDHFQKRIWVCVSDTFDPITVAKTLFQSLTGYAPRSNTLSIMLEEISEKIGVMRFLLVLDDVWEDSWS KWEELKTVLSCNSLGSKILVTTRKGEVSRALGCVEDDVLLIGKVPEDVCRAIFAQVAFHGWNAKEKEGVEDLCKNAVEKCDGSPLAAKVLGGVMQAKRSK SEWQRLLTSEMWHLDKVKEEVFGPLALSYYDLPAELRQCFQFCAVFPKDYEMEKEQLIKLWISQGFVGERGKQDVEDIGEEYFQILVARSFFQDVHKFTE VGRTRTTYCKMHDLVHDFAQMLSNGECVSMTSKDTRDGNHSVVRNLMIDYGSPDYDSPESLSINSSRFYFSKDLRGFMAKSLQNMEPGEWGHLCGIRSLV LIDSQLNIIPSTMGQLIHMRQLDLSSNRRLEELPDEICELYNLWVLSINRCFKLVRLPLEMGNKLVNLKHLENEGVPAPVPESIRRLNRLKTLTEFVIRP KHQRGGGASIADLKDMNQLQGILRVVGLSHVAESYEVEQANFAEKTGLTCLLLIFQDANREEYYYEDSSGNKDEELLEAVRPSTNLEEVIIRQYMGTSIS PAWMASLSNLTALTFRGCNEVKYLPPLGGLRSLEMLSFMEMGKVNKLGVELLGHHHEQQQLQHDVGAFPRLRFLKFFSMSEWEEWDDTLLSSPSVMPRLS CLIFLDCNQLKKLPDAILQKPTLERLDVNYCDSLQSNMSLDKISHIPTVIVNEVQVRTDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	2.0	0.9866
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	2.8	0.9820
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	3.7	0.9725
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	5.2	0.9814
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	5.7	0.9799
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	6.6	0.9748
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	7.0	0.9770
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	7.1	0.9793
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	7.9	0.9769
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	8.5	0.9744

Compare expression of checked genes

Lus10002609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.