Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 49 / 1e-08 UCC1 uclacyanin 1 (.1) AT3G17675 45 / 6e-08 Cupredoxin superfamily protein (.1) AT2G31050 46 / 2e-07 Cupredoxin superfamily protein (.1) AT2G26720 44 / 6e-07 Cupredoxin superfamily protein (.1) AT2G02850 43 / 7e-07 ARPN plantacyanin (.1) AT5G26330 41 / 1e-05 Cupredoxin superfamily protein (.1) AT5G07475 41 / 1e-05 Cupredoxin superfamily protein (.1) AT1G72230 40 / 2e-05 Cupredoxin superfamily protein (.1) AT1G45063 39 / 6e-05 copper ion binding;electron carriers (.1.2) AT3G27200 37 / 0.0002 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020276 [exp] 140 / 6e-42 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10002617 [exp] 137 / 9e-42 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1) Lus10006682 [exp] 66 / 3e-15 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10002614 [exp] 65 / 3e-15 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10007027 [exp] 65 / 1e-14 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10007028 [exp] 62 / 6e-14 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10002618 [exp] 62 / 6e-14 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10007025 [exp] 62 / 1e-13 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10006681 [exp] 61 / 1e-13 AT2G32300 59 / 2e-12 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030450 [exp] 74 / 2e-18 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 74 / 2e-18 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 73 / 3e-18 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 72 / 6e-18 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 71 / 3e-17 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 68 / 2e-16 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 44 / 8e-07 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 42 / 5e-06 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 41 / 7e-06 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 40 / 2e-05 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10002616 pacid=23168825 polypeptide=Lus10002616 locus=Lus10002616.g ID=Lus10002616.BGIv1.0 annot-version=v1.0 ATGGGAGACCACAACGTGTACAAAGCCAACGACGTGGAATTCCAAAACTGCGAGGTCCCATCTGCAGCGAGCCGTGGCTTAGCTATGACTTCTGGAAACG ACATTGTCACACTGACAACTCCAGGTAGAAAGTGGTACATTTGTGGAAAGCCGAACCATTGCTCGAGCTATAACCAAAAGCTTGTAATCTTCGTTAAACC CTAA
AA sequence Show only first row Show all	>Lus10002616 pacid=23168825 polypeptide=Lus10002616 locus=Lus10002616.g ID=Lus10002616.BGIv1.0 annot-version=v1.0 MGDHNVYKANDVEFQNCEVPSAASRGLAMTSGNDIVTLTTPGRKWYICGKPNHCSSYNQKLVIFVKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17675			Cupredoxin superfamily protein...		Lus10002616 [exp]	0	1

Compare expression of checked genes

Lus10002616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.