Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45063 101 / 4e-25 copper ion binding;electron carriers (.1.2) AT2G32300 89 / 1e-20 UCC1 uclacyanin 1 (.1) AT3G17675 85 / 1e-20 Cupredoxin superfamily protein (.1) AT2G31050 82 / 1e-18 Cupredoxin superfamily protein (.1) AT3G27200 79 / 1e-17 Cupredoxin superfamily protein (.1) AT5G07475 78 / 3e-17 Cupredoxin superfamily protein (.1) AT5G26330 77 / 1e-16 Cupredoxin superfamily protein (.1) AT5G20230 76 / 2e-16 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT2G26720 76 / 4e-16 Cupredoxin superfamily protein (.1) AT3G53330 75 / 2e-15 plastocyanin-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020276 [exp] 465 / 2e-165 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10002616 [exp] 137 / 5e-41 AT3G17675 50 / 6e-09 Cupredoxin superfamily protein (.1) Lus10007027 [exp] 130 / 3e-37 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10002614 [exp] 115 / 1e-31 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10006682 [exp] 115 / 2e-31 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10007025 [exp] 114 / 7e-31 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10007028 [exp] 112 / 2e-30 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10006680 [exp] 112 / 2e-30 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10002618 [exp] 110 / 4e-30 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061300 [exp] 136 / 9e-40 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 132 / 3e-38 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 132 / 4e-38 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 129 / 6e-37 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 127 / 4e-36 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 124 / 3e-35 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 95 / 8e-24 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 93 / 7e-23 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 84 / 1e-19 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 84 / 1e-19 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10002617 pacid=23168836 polypeptide=Lus10002617 locus=Lus10002617.g ID=Lus10002617.BGIv1.0 annot-version=v1.0 ATGACTAATTTTTCGAGTTTGTTGGCTGTTCTTGTCGCGGTTGTGACTTTCATTCCTTCAACAGTTCTTGCGAAAGACTTCATCGTCGGCGATAGTTATG GTTGGACCAAAAACTTCGACTATCAATCTTGGGCGAAAGACAAGAACTTTCACGTTGGTGATAGACTCATTTTCAAGTACCGAATGGGAAATCACAACGT GTACAAGGCCAACGGGACAGAATTCCAGAATTGTGAGGTCCCATCGGCTGCAAGCCGTGGCTTGGCCATGACTTCTGGAAATGACATTGTTATGCTGGCG ACTCCAGGAAGAAAATGGTACATTTGTGGAAAACCGAATCACTGCTCGGCTTATAACCAGAAGCTTGTGATCGTCGTGAAGCCCAATACAGCATGGGCTC CAAGCCCATCACCTTCTTTAACTCCCGGAAATGGATGGGCTCCAAGCACTTCACCTCCTTTAACTTCCGGTAGGGATTTCATCGTGGGCGATAGTTATGG TTGGACCATAAACTTCGACTACCAATTTTGGGCCAAGGACAAGGACTTCCGGGTCGGGGACAGACTCATTTTCAAGTACCCAATGGGAAACCACAACGTG TACAAGGCTAACGGGACGGAGTTCCAAAACTGCGAGGTCCCGTCTGCAGCGAGCCGTGGCTTAGCAATGACTTCCGGAAACGACATCGTTACCCTGGCGA CTCCAGGGAGAAAGTGGTACATTTGTGGAAAACCGAATCATTGCTCGAGCTATAACCAGAAGCTTGTGATCTTCGTGAAACCCAGGACCAGTTCCTGGGC TCCGAGCCCATCTCACTCCTGGTCCGCCGCCACCGTGGAGAAGAAGACGGTGCCATTTTTCAACTTCAATTGA
AA sequence Show only first row Show all	>Lus10002617 pacid=23168836 polypeptide=Lus10002617 locus=Lus10002617.g ID=Lus10002617.BGIv1.0 annot-version=v1.0 MTNFSSLLAVLVAVVTFIPSTVLAKDFIVGDSYGWTKNFDYQSWAKDKNFHVGDRLIFKYRMGNHNVYKANGTEFQNCEVPSAASRGLAMTSGNDIVMLA TPGRKWYICGKPNHCSAYNQKLVIVVKPNTAWAPSPSPSLTPGNGWAPSTSPPLTSGRDFIVGDSYGWTINFDYQFWAKDKDFRVGDRLIFKYPMGNHNV YKANGTEFQNCEVPSAASRGLAMTSGNDIVTLATPGRKWYICGKPNHCSSYNQKLVIFVKPRTSSWAPSPSHSWSAATVEKKTVPFFNFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53330			plastocyanin-like domain-conta...		Lus10002617 [exp]	0	1

Compare expression of checked genes

Lus10002617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.