Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03980 313 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 303 / 4e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 278 / 3e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 271 / 3e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 99 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 92 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 89 / 8e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G05260 89 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 88 / 2e-20 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020265 [exp] 440 / 3e-158 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 112 / 6e-29 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 109 / 5e-27 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 98 / 4e-24 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 97 / 9e-24 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 91 / 3e-21 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 90 / 4e-21 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 89 / 7e-21 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 90 / 9e-21 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059100 [exp] 358 / 1e-125 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 339 / 2e-118 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 317 / 2e-109 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033600 [exp] 271 / 5e-91 AT3G03980 279 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 118 / 2e-31 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 117 / 4e-31 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 101 / 2e-25 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 97 / 6e-24 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 97 / 7e-24 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 94 / 7e-23 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10002628 pacid=23168852 polypeptide=Lus10002628 locus=Lus10002628.g ID=Lus10002628.BGIv1.0 annot-version=v1.0 ATGGCTACCACCGCATCCTCATCGCCTCCCTCACTTCCACTCGTCGACAAGGTGGCGATCGTCACCGGATCCTCTCGCGGCATCGGAAAGGCCATCGCTC TCCACCTAGGATTACTGGGTGCTCGAGTCGTCGTCAATTACTCTTCCAACAAGGAACAAGCTGACCTCGTCGCCACCGAACTCAACTCCTGCTCCGTTTC CAATACGCTTCGCGCCATTTCTGTATTGGATGAAGTCTCCGATCCAGCTCATGTGAAGTCCTTGTTCGACGAGGCCGAGAGAGCGTTCGGGTCCGAGGTC CATATCCTGGTGAATTCCGCCGGGGTGCTGGATTTGAAGTATCCTTCTGTAGCCGATACTTCCTTGGAGGATTTCGATCGTACTTTCGGTGTGAATACTA AAGGTGCGTTCTTGTGCTGCAAGGAGGCGGCAAATCGGGTGAAACGTGGAGGTGGAGGCAGGATAATCTTGCTATCGTCATCCTTGGTGGCTTCATTGAG ACCAGGGTTTGGGGTCTACGTTGCTTCCAAGGCTGCTGTTGAGGCGATGGTGAAGGTTCTGGCAAAGGAGCTTAAGGGAACTGGGATCACTGCAAACTGC GTGGCGCCTGGTCCAATTGCGACTGAAATGTATTTCGCTGGGAAGTCCGAGGAGGTGATTCGTAGGAACATTGATGAATGCCCGTTGAGCCGACTTGGGG AACCTAACGACATTGCTAATGTTGTTGGGTTTTTAGCTAGTGATGCTGGTGAGTGGGTCAATGGACAGGTGATTCGTGCCAATGGTGGGTATGTTTAA
AA sequence Show only first row Show all	>Lus10002628 pacid=23168852 polypeptide=Lus10002628 locus=Lus10002628.g ID=Lus10002628.BGIv1.0 annot-version=v1.0 MATTASSSPPSLPLVDKVAIVTGSSRGIGKAIALHLGLLGARVVVNYSSNKEQADLVATELNSCSVSNTLRAISVLDEVSDPAHVKSLFDEAERAFGSEV HILVNSAGVLDLKYPSVADTSLEDFDRTFGVNTKGAFLCCKEAANRVKRGGGGRIILLSSSLVASLRPGFGVYVASKAAVEAMVKVLAKELKGTGITANC VAPGPIATEMYFAGKSEEVIRRNIDECPLSRLGEPNDIANVVGFLASDAGEWVNGQVIRANGGYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	0	1
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10014902 [exp]	1.7	0.9024
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	2.0	0.8543
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	3.5	0.8633
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	3.7	0.8670
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	6.0	0.8202
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	6.0	0.8503
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	6.3	0.8150
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	7.1	0.8517
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	9.2	0.8355
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004238 [exp]	10.5	0.8135

Compare expression of checked genes

Lus10002628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.