Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04030 440 / 7e-154 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 425 / 8e-148 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 218 / 4e-68 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 211 / 1e-65 GARP Homeodomain-like superfamily protein (.1.2) AT1G69580 206 / 4e-63 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 190 / 1e-56 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G12730 150 / 9e-43 GARP Homeodomain-like superfamily protein (.1) AT5G45580 150 / 9e-43 GARP Homeodomain-like superfamily protein (.1) AT2G01060 145 / 1e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G29000 141 / 4e-38 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020264 [exp] 838 / 0 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 228 / 6e-72 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 225 / 5e-71 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 225 / 1e-70 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 225 / 1e-70 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 188 / 8e-55 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 188 / 1e-54 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10012142 [exp] 156 / 1e-44 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10010404 [exp] 155 / 3e-44 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060200 [exp] 608 / 0 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 577 / 0 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 233 / 5e-74 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 229 / 2e-72 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 223 / 1e-69 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.010G167901 [exp] 212 / 1e-65 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 183 / 4e-54 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 179 / 3e-53 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.010G174100 [exp] 181 / 4e-53 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 162 / 9e-47 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002629 pacid=23168851 polypeptide=Lus10002629 locus=Lus10002629.g ID=Lus10002629.BGIv1.0 annot-version=v1.0 ATGTACCATCATCATCACCAAGGACAGAACATGCACTCTGCTTCAAGAATACCAATCCCTTCAGAGAGGCATCTGTTCCTGCAAGGTGGGAATGGCCCTG GAGACTCCGGGCTCGTCCTTTCGACCGATGCAAAGCCTAGACTGAAATGGACGCCAGATCTCCATGAGCGTTTCGTGGAAGCAGTCAACCAACTTGGAGG AGCAGACAAAGCTACTCCGAAAACAGTTATGAAGCTTATGGGAATTCCTGGACTTACATTATACCACCTAAAGAGCCATTTACAGAAGTTCAGGCTCAGC AAGAATCTTCACGGACAGGCTAATAGTGGAAGCAACAAGATGGGTGGTCTTGCTGTTGCTGTAGAGAGAGTGCCTGAAACAACTCAAACACATACGACTC CAAATAACTCGAGCATTGCCCCGCAAACAAACAAAAGCTTGCATATCGGCGAGGCACTACAGATGCAAATTGAAGTGCAGAGGAGGTTGCACGAGCAGCT TGAGGTACAAAGACATTTACAGCTTCGCATAGAGGCACAAGGGAAGTACCTACAGTCAGTGCTTGAGAAAGCACAGGACACCCTTGGCAATCAAAACTTG GGTGCAGTAGGACTTGAAGCTGCCAAAGTTCAGCTCTCTGAACTGGTCTCTAAAGTATCTACTCAATGTCTCACTTCTGCATTTTCAGAGCTGAAAGAAC TGCAGGGTATGTGCCCTCAGCACATACAAACAAACCAGCGCACTGATTGTTCTATCGATAGCTGCCTGACGTCTTGCGAAGGACCTCAAAAGGAGCAAGA GATGCACAACATAGGCATGGGATTGAGGCCCTATAATGGCGGCAACAGTCTCTTGGAGGCAAAAGAACTTCCTGATCCGAACATGCTACGGCAGTCTGAC ATCAGGTGGAGAGATGATGTTAAAGAGAATAACAATATGTTTCTGACATCACTAGGAAGAACTGCAGAGAGGACAGTTTTCCCGACTGAAAGAAGCGCTA GTGATTTATCCATGAGTGTGGGACTCCATGTCGATAGAGGGAACGCAAACGGCAGACTTTCTGAAGGAAGATACAAAGGGAGAAGCGACAACGACATGTT CCCTGACCAAAATAACAAGAAGTCAGATTCATTGCCTTACATTGGGAAAAGGCTGGACTTGAACTCCCACGACGAGATGGATGCTACTTCAGGCTGCAAG CAACTTGACCTGAACGGTTTCAGCTGGAATTGA
AA sequence Show only first row Show all	>Lus10002629 pacid=23168851 polypeptide=Lus10002629 locus=Lus10002629.g ID=Lus10002629.BGIv1.0 annot-version=v1.0 MYHHHHQGQNMHSASRIPIPSERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKFRLS KNLHGQANSGSNKMGGLAVAVERVPETTQTHTTPNNSSIAPQTNKSLHIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQDTLGNQNL GAVGLEAAKVQLSELVSKVSTQCLTSAFSELKELQGMCPQHIQTNQRTDCSIDSCLTSCEGPQKEQEMHNIGMGLRPYNGGNSLLEAKELPDPNMLRQSD IRWRDDVKENNNMFLTSLGRTAERTVFPTERSASDLSMSVGLHVDRGNANGRLSEGRYKGRSDNDMFPDQNNKKSDSLPYIGKRLDLNSHDEMDATSGCK QLDLNGFSWN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	0	1
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	1.4	0.9804
					Lus10019472 [exp]	2.4	0.9670
AT5G37730			unknown protein		Lus10033584 [exp]	3.5	0.9514
AT2G39440			unknown protein		Lus10018300 [exp]	3.5	0.9638
AT2G39440			unknown protein		Lus10040607 [exp]	4.2	0.9621
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	4.2	0.9645
AT5G21910			unknown protein		Lus10038069 [exp]	4.6	0.9613
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	7.2	0.9504
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	7.5	0.9603
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	7.7	0.9628

Compare expression of checked genes

Lus10002629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.