Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56690 945 / 0 CIP111 Cam interacting protein 111 (.1) AT5G03340 451 / 6e-141 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 444 / 4e-138 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 441 / 4e-137 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G03670 336 / 4e-101 CDC48B cell division cycle 48B (.1) AT3G01610 332 / 2e-97 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT1G03000 226 / 9e-61 PEX6 peroxin 6 (.1) AT5G08470 214 / 3e-56 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G53750 194 / 2e-53 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 191 / 2e-52 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020255 [exp] 1595 / 0 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10020256 [exp] 704 / 0 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10037385 [exp] 450 / 2e-140 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 448 / 9e-140 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 441 / 5e-137 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 440 / 1e-136 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 439 / 2e-136 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 373 / 2e-112 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 365 / 2e-112 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035000 [exp] 1047 / 0 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.017G108200 [exp] 459 / 5e-144 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 447 / 1e-139 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 447 / 2e-139 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 446 / 3e-139 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 446 / 6e-139 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.019G032300 [exp] 387 / 6e-122 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 382 / 2e-120 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.001G128700 [exp] 359 / 3e-109 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.013G151600 [exp] 346 / 2e-102 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10002639 pacid=23168838 polypeptide=Lus10002639 locus=Lus10002639.g ID=Lus10002639.BGIv1.0 annot-version=v1.0 ATGCCTTCAAAGACGAAGAAGCAGTCCAAGGGGCAGTCGAGGCTGTCGAGCTCGGAGCTCTCCGGTTCGTCGCCTTGGACTCCGTCACTGACGCCTTCTC TAGCTTCTCAATTCGGCCAAGAAGAAGAGGAAGAAGAATACATATCCTCCTGTATGGAAGAAGCGTCTAAGAGATTCCCTGATTTGATCGGGAAATCCGC TGTTGCTAGCCGAATCACCGACGTGGCTACTGATTCCAGAGGCGGAAAAATCTGGCTCTCGGAGGCTTCCATGGTCGCTTCTTCCATCGTCCCCGGCTCC GTTGTCTCGGTGTCAATTGCTGCTTCAGCTAGTAATGGTTTTCCTCTCAGTGCGATATCGATAGATTGTACTACACAGATGGATATGGAGTCGATGGACG AACAAACTTATGCCGAAGGAAACTACTTTGCTCTTGCTACTGTATTTCCTTCTTGTAAGGTTTTGAAGAATGGAGTGAGGTTGTCGACAGATCTGTGGTA CACAATGGGTTGTCCTGCTTCAAACCGAAATGTCTTTGTCTATCCTATAGAGAGTAGCTTCGTAGGTAGTCGGATAAATGGAAGTGCCAAACGAGATGAC ACGGCGAAAGTGTGTATCAGAAATTGCAGCAAGCTATGCTTAGACTTGGTCCCTTTGAAGGAACGGTTGCAAATGGCGAGTGGCGAAAACTCTCATGATT CGTCTGCAAACAGTGTACTTTCATCTCCAAGGACACCAATGTCTAGATCGAAACTCAGGTCACCTAGTCCTGGTCAATTCTCTGCACCAAGATTTGAAGA AGCAGCAGCAGTTGGTTTGTCATACCCCACTGGTAAATTTGGGGATTCGTCTCAAATTAAGGGCGTGCTCAAGGATGAAAATTCGAGAAAGCTACTGCAA GTGTGTACTGCTTCATGGCTATGCTCTCGTGTTTTAATCAGTGGGAATGTCGTTGCAGTCCCTGTGATGTCAGAGCTTTTCACTTTCCGTGTGACGAGTG ATCAAGAATTTACAGCTGTTGATTGTAACCAAGGCACGGAAGGCAAAAGGACTAATAGTTACACTAAAATGGCAAACCATGAGACTGATGCCTTGGTCAT AAATCATGAAACACAAGTGTATTTCTGTCACCAAGAAGGCTCAGCAGATGAAACCCCTAAGAAAAGGGGTGAGAAAACTGGTAGATATGATGTCCCAAAA TTGGGTGGTCTACACAAGGAATACAATATTTTGAAGGAAATAATTGCTATTGCTTCATCCATGAAGAACAATTTGTCAAGTCTTGGTTTACGAACTACAA AGGGAGTGCTTCTTCATGGTCCACCTGGCACTGGGAAAACTTCCTTGGCTCGTCTATGCGCCCACGATGCTGCACTTAAAATTTTCACCGTTAACGGACC CGAGATAATAACTCAATATCATGGAGAAAGTGAGCAAGCAATGCGTGAAGTGTTTGATTCTGCCAGTCAAGCTGCACCTGCTGTGGTATTCATCGATGAA TTGGATGCCATTGCACCCGCACGGAAAGAAGGAGGTGATGAGCTATCTCAGAGAATAGTGGCCACGCTATTGAACTTGATGGATGGTATTAGTAGGACTG ACGGAGTGGTCGTTATTGCGGCAACCAACCGGCCTGATAGTATTGAACCTGCACTGAGACGTCCAGGAAGACTTGATAGAGAAATTGAAATAGGTGTTCC GTCACCCCAGCAACGCCTAGATATAATCCATACCCTTCTCGGTGAAATGGAGCACTGCATTTCATATAGCGAAGCTAAGGATCTTGCCATGGCTACACAT GGCTTTGTGGGTGCTGATTTAGCTGCACTGTGTAACGAAGCTGCCTTGGTGTGTCTTAGGCGGTTTACTTCGCTTCTGAACTCTACGCTTAGTGCGGATT CTGGATCGGGGATGGTCTCCACTTCTCCTGCTTCGCTACCGCCGATTCTGACATCTTCAAGCTTAAGTACTGCCTCCTCATTAGTAGCTGATAACATAGA TGAAGGTGCTAGTAACGGTCACGAAGATTCATTCTCAGTTGAAGACAAGCTATTGAAAGTTGTCTATGAAGACTTCGAAAAGGCCAGGATGAAAGTGAGG CCTAGCGCCATGCGAGAGGTAATACTCGAGGTACCAAAAGTTAAATGGGATGACATTGGTGGGCAACGAGAAGTAAAAACTCAACTGATGGAAGCAGTCG AATGGCCTCAAAAACACCAGGAGGCATTCAAACGCATTGGCACTCGTCCCCCGTCTGGAATTTTGATGTTCGGTCCTCCTGGTTGCAGTAAAACGCTCAT GGCAAGAGCAGTAGCATCAGAAGCCGGATTAAATTTCCTGGCAGTTAAGGGTCCAGAGCTTTTCAGCAAATGGGTTGGTGAATCTGAAAAGGCTGTGAAA TCCCTTTTCGCTAAGGCCAGGGCCAATGCACCGTCGATCATCTTCTTCGACGAGATTGATAGTCTTGCAGTCATCCGTGGAAAGGAAAGCGATGGAGTTT CTGTTTCTGACCGGGTCATGAGCCAACTTCTTGTTGAATTAGATGGCCTGCATCAGCGAGTGAATGTTACCGTTATCGCTGCCACAAATCGACCAGATAA GATTGATTCAGCCCTTCTAAGGCCAGGACGTTTCGATCGATTACTGTATGTGGGACCTCCAAACGAGAACGATCGGGAAGCCATATTTTCGGTCCATCTA CGTCGAATTCCACAAAGTTCAGATGTCAATGCGAAAGAGCTTGCTTCTCTGACAGATGGATATACAGGAGCCGACATCTCACTAATATGTCGCGAAGCCG CAATTTCAGCTCTCGAGAAAATAGCTAACACGGGTGCCCTATGTTGTGTGGCCGCTGGGCCACATGGTGGAGCAAAGTCTCCTGTCGAAGGTGGAGGCAG AAATGATCCGTCTTTCAACGAGGGAGAAGAACAACCCCCTCGTTGGAGGACGAATTCTAGCTTCTCTCCTCCGGCTTTGAGGATGTGGGATTGCAGATTA CACTCTGATGGTGTTTCGCAAGAGCCTCATGGTGTTCGTGGTTCATCTGTTTCGTCGCATAGCAGGAACTGGATGGGTAGTGATCAGTATACCAACCATC ACCATTCTGTCTCTGATGGTGCTTTGTCTTTCTCTGATAGTCCGCCTGATAACATCCCACGGAATCGATGGACATCGCCATTGCCAAAGTTCCATTTAAG CGAGCTTTCTTCTGTCGCCGCAGGAGGCTCTAGAATTCAAACTTCTTGGCTTCCTCGCTCCGTTGAGAGACCATTTCCTGTTAGAGCCAATGTAGCATCC CCTAGCCTGGGTTCTTCGTCTCCTCTTTCCGAATCCGGTCAATGGGAATCGACATCAATAAACAAGCGCCCTTTCCGCAGCTTCAACAGCAGGCGATCCT CGCACACATCTAAAGCTGTCTATCCTCTAATGTTCCGTAACCCAGTCTCCGACTGCGAAACACTTGGTGGTGATGCTGACTCCAGCAGCTTTGGTCAGGT GACACCATCGTCTTCTGGCTGGCCCGATCACAGTCCTAGCATCGAGTACAAATTCCAGAAGACCCTCATGGAACTCCACGAGACAACGTCGCCTGACCCC AGCGCTAGCTCCAGAAGAGACGGCTTTCGATGGAGCAGCGCCAGCAGCTACGATATGGGGCTTGACATAGGGGAGCAGCAGCAGCTCGATTTGGAGAGCC TCAGGTCCAGCAGCAGCACTGCAGTGGATCAAAAGTGCGGAGTCTGCTCGAAACTCCTCTGGCAGAAATCTCCCTGGAGTTCGAATCGGATCATGAGAGG AGGTGTCGGAGACATGCCTACCGCTGGGGTCCTACACTGTGCACATGTCTTCCACGCCGAATGCTTGGAACAGGTGACGCCGAAGACTCAGGTCCATGAC CCTCCTTGTCCGCTGTGCTCGAAAACCATCGGTGGTCTGGAAGGTGGCGAATGTGCAGGTGCTGTTGCTGAACCCTTGCTGAGATCGATTCGGAGAAGTA GAGGACCGTTGACTTTGTCTGATGATCATCATAACAACAACTCTAAGGATATGCTAATAAGGAGGAAGGCACCGCCATGCCAAGAGGAGAGTAGCTCCTC ATTATCGAGCCGGCTTAAGAAGCATTTCGCCCCGAAAGGGAAAACCGGCAAAGTGTTGTTCCACAGGACTGGATCTTCTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10002639 pacid=23168838 polypeptide=Lus10002639 locus=Lus10002639.g ID=Lus10002639.BGIv1.0 annot-version=v1.0 MPSKTKKQSKGQSRLSSSELSGSSPWTPSLTPSLASQFGQEEEEEEYISSCMEEASKRFPDLIGKSAVASRITDVATDSRGGKIWLSEASMVASSIVPGS VVSVSIAASASNGFPLSAISIDCTTQMDMESMDEQTYAEGNYFALATVFPSCKVLKNGVRLSTDLWYTMGCPASNRNVFVYPIESSFVGSRINGSAKRDD TAKVCIRNCSKLCLDLVPLKERLQMASGENSHDSSANSVLSSPRTPMSRSKLRSPSPGQFSAPRFEEAAAVGLSYPTGKFGDSSQIKGVLKDENSRKLLQ VCTASWLCSRVLISGNVVAVPVMSELFTFRVTSDQEFTAVDCNQGTEGKRTNSYTKMANHETDALVINHETQVYFCHQEGSADETPKKRGEKTGRYDVPK LGGLHKEYNILKEIIAIASSMKNNLSSLGLRTTKGVLLHGPPGTGKTSLARLCAHDAALKIFTVNGPEIITQYHGESEQAMREVFDSASQAAPAVVFIDE LDAIAPARKEGGDELSQRIVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSPQQRLDIIHTLLGEMEHCISYSEAKDLAMATH GFVGADLAALCNEAALVCLRRFTSLLNSTLSADSGSGMVSTSPASLPPILTSSSLSTASSLVADNIDEGASNGHEDSFSVEDKLLKVVYEDFEKARMKVR PSAMREVILEVPKVKWDDIGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVK SLFAKARANAPSIIFFDEIDSLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNENDREAIFSVHL RRIPQSSDVNAKELASLTDGYTGADISLICREAAISALEKIANTGALCCVAAGPHGGAKSPVEGGGRNDPSFNEGEEQPPRWRTNSSFSPPALRMWDCRL HSDGVSQEPHGVRGSSVSSHSRNWMGSDQYTNHHHSVSDGALSFSDSPPDNIPRNRWTSPLPKFHLSELSSVAAGGSRIQTSWLPRSVERPFPVRANVAS PSLGSSSPLSESGQWESTSINKRPFRSFNSRRSSHTSKAVYPLMFRNPVSDCETLGGDADSSSFGQVTPSSSGWPDHSPSIEYKFQKTLMELHETTSPDP SASSRRDGFRWSSASSYDMGLDIGEQQQLDLESLRSSSSTAVDQKCGVCSKLLWQKSPWSSNRIMRGGVGDMPTAGVLHCAHVFHAECLEQVTPKTQVHD PPCPLCSKTIGGLEGGECAGAVAEPLLRSIRRSRGPLTLSDDHHNNNSKDMLIRRKAPPCQEESSSSLSSRLKKHFAPKGKTGKVLFHRTGSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	0	1
AT5G55040			DNA-binding bromodomain-contai...		Lus10032629 [exp]	4.5	0.8127
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	10.9	0.8438
AT5G62960			unknown protein		Lus10042109 [exp]	11.5	0.8096
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	12.3	0.8061
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	12.6	0.8351
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	13.6	0.8247
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	13.8	0.8019
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	17.5	0.7835
AT1G10380			Putative membrane lipoprotein ...		Lus10036906 [exp]	19.0	0.7810
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	21.2	0.8220

Compare expression of checked genes

Lus10002639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.