Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10510 452 / 4e-154 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 398 / 5e-134 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G20840 308 / 2e-98 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 300 / 3e-95 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 299 / 8e-95 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 295 / 5e-93 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 271 / 4e-86 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 262 / 6e-81 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 193 / 6e-56 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 172 / 5e-49 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012728 [exp] 830 / 0 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10031831 [exp] 306 / 9e-99 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 305 / 1e-96 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 282 / 6e-88 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 281 / 7e-88 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 273 / 4e-87 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10001553 [exp] 199 / 8e-59 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10008939 [exp] 199 / 2e-57 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 198 / 3e-57 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011600 [exp] 506 / 2e-176 AT5G10510 510 / 5e-177 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Potri.001G018400 [exp] 306 / 5e-98 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 309 / 5e-97 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 302 / 2e-96 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 301 / 1e-95 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 298 / 6e-95 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.010G181000 [exp] 284 / 2e-87 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 274 / 3e-84 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 271 / 3e-83 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 271 / 5e-83 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10002657 pacid=23168811 polypeptide=Lus10002657 locus=Lus10002657.g ID=Lus10002657.BGIv1.0 annot-version=v1.0 ATGGCACCGGTTCCAGCTGCTGTAGGTAGTAACTGGCTTTCCTTCTCGCTTTCTCCCATGGAGATGCTCAGATCCTACGATGAAGCAGCAGCAGCAGCGG CTGCTGCCTCCGACGACTCGACCTCGCATCATCACTACTTCCTTGATAACTTCTACTCTCACGGTTGGGGAAATCCGAAGGACGGTGGGGCGGTGGCGGA GACGGCGCTGCTGACGAGCTTCATGGACCAGCAGCAATCTGGAGGAGGTCGGACTCCTCCTCCGCAGCCGAAGCTGGAGGACTTTCTAGGAGATTCAGCG GCGATGGTGACGTACGCGGAGAATAGCCAAACAGGTGGAGGAGGAGATGCGCAGGACTCTTCCTCCCTGACTCAAATCTACGACAACGGTGCTTCTGCCT ACTTCAACGACCATCAGCAAGATCTGAAGGCGATTGCGGCTTTCCAAGGCGGTTTCTCCACCAACTCCGGCGCATCCGAGGTGGATGACGACGGCCGCAG CACCGAGTTCATGGCGGCGGCCGCTACGGCGGTGACTCAGTCGGTTGGGAACGATTTGGCTTACTCGCGAAACGCCTTGTCGCTTGCGGTCAATACAGCT GCTCCTTCAGCTCACAATAACAACGATAGCTCTTCCAATTCGTCGGGGAAGGGTATGGCGGTGGTTAGCGTTGTTGACTCCGATTGCAATAAGAAGCTCG CCGATACTTTCGGCCAGCGAACCTCCATTTACAGAGGCGTCACTAGGCATAGATGGACAGGAAGATACGAAGCCCATCTATGGGATAACAGCTGTAGGAG AGAGGGTCAAGCTAGAAAAGGACGTCAAGGTGGATATGATAAAGAAGATAAAGCAGCTAGAGCTTACGATTTAGCAGCGCTCAAATACTGGGGCCCCACT GCCACCACCAATTTCCCTGTGTCTAATTATAACAAAGAACTCGAGGAGATGAAGAAAAGTAGTGGGTTCTCGAGGGGTGCATCAATTTACAGGGGTGTTA CGAGGCATCATCAGCAAGGTCGTTGGCAAGCGAGGATCGGCCGAGTTGCTGGAAACAAAGACTTGTACCTCGGCACATTCGCTACTGAGGAGGAAGCAGC AGAGGCATACGACATAGCGGCCATAAAGTTCAGGGGTATGAACGCCGTCACCAACTTTGAGATGAATCGGTACGATGTCGAGGCAATAATGAAGAGTGCT TTGCCCATCGGCGGAGCTGCAAAGCGCCTGAAAATCTCGCTCGAGTCAGAACAGAAGCCAGCTCTGACCCATCACGATCCCCAACATCATCATCATGATG AAAATAACATTAGCTTCGGTTCGGTGCAGCAGCAGCAACAACAGATCCCTTCTATCCCTTGCGGCATCCCTTATGACGCAGCCTATTACAACCACAGCCT CTTCCACCACTTCCCAGCTGCAGCAGGTAATAGCCAAGGACAAGGAGGTTCGAACATTTCAGCAGTTCCGACCTCGAACATGTTGACTCCTCCGATGATG CCGCAAACAACCGACTTCTTCCTGTGGCCTCATCACCAGTCGTACTGA
AA sequence Show only first row Show all	>Lus10002657 pacid=23168811 polypeptide=Lus10002657 locus=Lus10002657.g ID=Lus10002657.BGIv1.0 annot-version=v1.0 MAPVPAAVGSNWLSFSLSPMEMLRSYDEAAAAAAAASDDSTSHHHYFLDNFYSHGWGNPKDGGAVAETALLTSFMDQQQSGGGRTPPPQPKLEDFLGDSA AMVTYAENSQTGGGGDAQDSSSLTQIYDNGASAYFNDHQQDLKAIAAFQGGFSTNSGASEVDDDGRSTEFMAAAATAVTQSVGNDLAYSRNALSLAVNTA APSAHNNNDSSSNSSGKGMAVVSVVDSDCNKKLADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPT ATTNFPVSNYNKELEEMKKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGMNAVTNFEMNRYDVEAIMKSA LPIGGAAKRLKISLESEQKPALTHHDPQHHHHDENNISFGSVQQQQQQIPSIPCGIPYDAAYYNHSLFHHFPAAAGNSQGQGGSNISAVPTSNMLTPPMM PQTTDFFLWPHHQSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	0	1
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	1.7	0.9585
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	2.0	0.9227
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	2.0	0.9513
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	3.9	0.9355
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	4.0	0.9170
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	4.1	0.8995
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	4.9	0.9195
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	6.3	0.9157
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	6.5	0.9053
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	8.5	0.9158

Compare expression of checked genes

Lus10002657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.