Plant FIBer expression Database

Lus10002710 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39730 781 / 0 RCA rubisco activase (.1.2.3)
AT1G73110 340 / 5e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT2G03670 45 / 8e-05 CDC48B cell division cycle 48B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000518
[exp]
945 / 0 AT2G39730 790 / 0.0 rubisco activase (.1.2.3)
Lus10004708
[exp]
776 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3)
Lus10040275
[exp]
774 / 0 AT2G39730 730 / 0.0 rubisco activase (.1.2.3)
Lus10003234
[exp]
768 / 0 AT2G39730 757 / 0.0 rubisco activase (.1.2.3)
Lus10010868
[exp]
644 / 0 AT2G39730 642 / 0.0 rubisco activase (.1.2.3)
Lus10035616
[exp]
387 / 2e-133 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3)
Lus10041627
[exp]
342 / 8e-114 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G200500
[exp]
812 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3)
Potri.008G058500
[exp]
810 / 0 AT2G39730 803 / 0.0 rubisco activase (.1.2.3)
Potri.016G101100
[exp]
689 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3)
Potri.001G037300
[exp]
345 / 3e-115 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00004 AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence
>Lus10002710 pacid=23180551 polypeptide=Lus10002710 locus=Lus10002710.g ID=Lus10002710.BGIv1.0 annot-version=v1.0
ATGGCCGCCACCATCTCCACCGCCGGATCTGTCAACAGAGCACCGTTGTCGTTTAATGGGTGTGGAGCTGGGAATTCAGTCTCCGCGTCAGCTTTCTTCG
GGAAGAAAGTAGGAGTGAGGTCGTCGTTCCCGAAGCTTTCGGGGAACTTCAAGGTTGCGGCGGCGGCGGCTGAAGACGCAGATGAGGAGAAGCAAACGGA
GAAGGACAGATGGGGACATCTGGTAAAGGACATGTCTGATGACCAACAAGACATCACCAGAGGGAAAGGTATGGTGGACTCTCTGTTCCAAGCACCTCAG
ATGGCCGGAACTCACTACGCCGTCATGAGCTCCTACGACTACGTCAGCAAGGGACTTAGAACATACGATTTGGACAACACAATGGGAGGATTCTACATCG
CCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTGAACCTCCCTAACATTAAGGTTCCCCTGATTTTGGGTGTGTGGGGAGGCAA
AGGTCAAGGAAAATCCTTCCAGTGTGAGCTTGTGTTTGCCAAGATGGGAATCAACCCAATCATGATGAGCGCGGGAGAGTTGGAAAGTGGGAACGCGGGA
GAGCCAGCCAAACTGATAAGGCAAAGGTACCGTGAGGCGTCGGACATTATCAAGAAGGGGAAAATGTGCTGCCTCTTCATCAACGATCTCGACGCAGGTG
CCGGTCGTATGGGCGGGACAACCCAGTACACAGTCAACAACCAGATGGTCAACGCCACTCTCATGAACATCGCCGATAACCCAACCAACGTCCAGCTCCC
CGGTATGTACAACAAGGAAGAGAACGCCCGTGTCCCAATCATCGTCACCGGTAATGATTTCTCAACACTATACGCACCTCTCATCCGTGATGGTCGTATG
GAGAAGTTCTACTGGGCTCCCACTAGGGATGACCGTATTGGTGTCTGCATTGGCATCTTCAAGACCGACAACATCCCCAACGATGACATCGTCAGGATCG
TCGACTCCTTCCCTGGCCAATCCATCGATTTCTTTGGGGCGCTGAGGGCGAGGGTGTACGATGACGAGGTGAGGAAGTGGATATCGGGAGTAGGAGTGGA
CACAATAGGGAAGAAGCTGGTGAACTCAAAGGACGGGCCACCGACATTCGAGCAGCCGAAAATGACAGTTGAGAAGCTGTTGGAGTACGGGAACATGTTG
GTGCAAGAGCAAGACAACGTCAAGAGAGTGCAGTTGGCCGACAAGTATATGAGCGAGGCTGCTCTTGGTGATGCTAACAAGGATGCCATTGATCGTGGAA
GTTTCTACGGGAAAGCGGCTCAGCAAGGAAATTTGCCAGTTCCAGAAGGATGCACCGACCCAAGTGCAGACAACTTTGATCCAACTGCAAGGAGTGACGA
TGGAAGCTGCCTTTACCAGTTCTAA
AA sequence
>Lus10002710 pacid=23180551 polypeptide=Lus10002710 locus=Lus10002710.g ID=Lus10002710.BGIv1.0 annot-version=v1.0
MAATISTAGSVNRAPLSFNGCGAGNSVSASAFFGKKVGVRSSFPKLSGNFKVAAAAAEDADEEKQTEKDRWGHLVKDMSDDQQDITRGKGMVDSLFQAPQ
MAGTHYAVMSSYDYVSKGLRTYDLDNTMGGFYIAPAFMDKLVVHITKNFLNLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG
EPAKLIRQRYREASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRM
EKFYWAPTRDDRIGVCIGIFKTDNIPNDDIVRIVDSFPGQSIDFFGALRARVYDDEVRKWISGVGVDTIGKKLVNSKDGPPTFEQPKMTVEKLLEYGNML
VQEQDNVKRVQLADKYMSEAALGDANKDAIDRGSFYGKAAQQGNLPVPEGCTDPSADNFDPTARSDDGSCLYQF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G39730 RCA rubisco activase (.1.2.3) Lus10002710
[exp]
0 1
AT1G12900 GAPA-2 glyceraldehyde 3-phosphate deh... Lus10041502
[exp]
2.0 0.9445
AT1G12900 GAPA-2 glyceraldehyde 3-phosphate deh... Lus10012591
[exp]
2.2 0.9525
AT4G10340 LHCB5 light harvesting complex of ph... Lus10013778
[exp]
5.0 0.9154
AT2G35260 unknown protein Lus10040089
[exp]
8.5 0.9056
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Lus10021627
[exp]
8.5 0.9088
AT5G38410 Ribulose bisphosphate carboxyl... Lus10033558
[exp]
8.5 0.9295
AT5G66520 Tetratricopeptide repeat (TPR)... Lus10010591
[exp]
8.9 0.8998
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10035635
[exp]
9.2 0.8851
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Lus10001653
[exp]
11.0 0.9022
AT2G39730 RCA rubisco activase (.1.2.3) Lus10000518
[exp]
11.3 0.9170

Lus10002710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.