Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 263 / 9e-79 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 213 / 2e-60 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59620 134 / 1e-33 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 131 / 7e-33 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 130 / 2e-32 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT4G27220 127 / 3e-31 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 125 / 7e-31 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 123 / 4e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 123 / 5e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 123 / 5e-30 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 733 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 544 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 318 / 2e-98 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 311 / 2e-95 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 292 / 4e-88 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 237 / 1e-68 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 235 / 6e-68 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 219 / 1e-62 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 182 / 6e-50 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379700 [exp] 352 / 9e-115 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 339 / 1e-105 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 338 / 1e-105 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 331 / 4e-102 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 326 / 8e-101 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 324 / 1e-99 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 322 / 8e-99 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G201800 [exp] 313 / 4e-97 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 315 / 3e-96 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 315 / 3e-96 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10002736 pacid=23162057 polypeptide=Lus10002736 locus=Lus10002736.g ID=Lus10002736.BGIv1.0 annot-version=v1.0 ATGTTTACTGTGCGGCCTTCAAGTGATTTTGCTCGCTTGATCAAGTCCCGCAAGGTTGATGAAGGACTTCTGAAGAAGCTGATTGTGGCGATGACGGCTA TTAATCAGCTTATTGACAATGCATCGGAGAAGCAGCTTACTGATGATGCAATCCGAAACTGGGTTGCTGACCTTAAAGATGCTGCATATGATGCCGATGA CTTGGTTGATGAGCTTGACTATGAACAACTGCGGTCACTGGCTGAATCTTCATCCAAAACTACCACAGGAAAGATGATAAGTTATATAAACAATCGCAAC CCTTTCAAGGATGGGATTAACGGGAAGCTGAAGAAGCTTCTTGAGCGGCTTGATGCCGTGATAAAACTCAAAGATGTCCACGGGTTGAGTGTAGATAGCG AAGAGAAACAATCGTCCGTTGAAACGACTGCAGCTTCTCGTGTGCATGAATCTTGTGTTTATGGCAGGGAAGGTGATAAGGAAGCTATTATGAAGTTGCT GCTCTTGGATGACCAAACAAGTGATGATTTAGGTGTCATCGTGATCGTGGGAACTGGTGGTGTGGGTAAAACTGCACTTGCTAAGCTGATATATGATGAT AGCAAGGTTCAAGAGCACTTTCAACTTAGTGCTTGGATTTGTGTTTCGGAGAAGTTTGATGCTAACAGAATTACGAAGCACATCCTTGAGGGGCTTAGCG GTAAGGCGATTGATAACCGTACTTTAGATCAGCTACAAATAGAGCTTAAAGGAAGATTGACACAGAAAAAGTTCCTTCTGATTCTAGATGATTTGTGGAA TGAGAATGATGGTGATTGGGATTTACTACAAACGCCTCTCAAACATGGTGTAAAAGGAAGTAAGATTATAGTTACAACACGGCATCCAAATGCAGCATCA GCAGTTCCAACTAGTGAGACGTTTCATTTAAGCCCCTTGACAAATGATGATTGCTGGACGTTGTTCTCAAACTGTGCCTCTGTTGATGGAAATTTAGGTG CAAGTCCAGAGCTGGAATCTGTTGGCAGAGAACTCATGGAGAAATGCCAGGGTCTACCTTTGTCTGCAAAAACATTAGGAGCTCTACTGCGCTCTGAACA GGATGCTGAGAAATGGGGGAATATACTGAGGAGTACTCTATGGAATCTCCAAGACAAGATTCTTCCTGCTCTGATTTTGAGCTATCATTATCTTCCATCA TATTTGAAACCATGCTTTGCTTACTGTGCAATATTTCCAAAAGATTATGCATTTGAAAGGGACGAACTTGTGCTCTTATGGATGTCACAATGCATGCCTT AA
AA sequence Show only first row Show all	>Lus10002736 pacid=23162057 polypeptide=Lus10002736 locus=Lus10002736.g ID=Lus10002736.BGIv1.0 annot-version=v1.0 MFTVRPSSDFARLIKSRKVDEGLLKKLIVAMTAINQLIDNASEKQLTDDAIRNWVADLKDAAYDADDLVDELDYEQLRSLAESSSKTTTGKMISYINNRN PFKDGINGKLKKLLERLDAVIKLKDVHGLSVDSEEKQSSVETTAASRVHESCVYGREGDKEAIMKLLLLDDQTSDDLGVIVIVGTGGVGKTALAKLIYDD SKVQEHFQLSAWICVSEKFDANRITKHILEGLSGKAIDNRTLDQLQIELKGRLTQKKFLLILDDLWNENDGDWDLLQTPLKHGVKGSKIIVTTRHPNAAS AVPTSETFHLSPLTNDDCWTLFSNCASVDGNLGASPELESVGRELMEKCQGLPLSAKTLGALLRSEQDAEKWGNILRSTLWNLQDKILPALILSYHYLPS YLKPCFAYCAIFPKDYAFERDELVLLWMSQCMP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10002736 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	3.7	0.9393
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	11.0	0.9110
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	11.5	0.9319
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	11.7	0.9317
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	16.2	0.9226
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	18.0	0.9246
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	18.0	0.9141
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	18.8	0.9278
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	20.1	0.9193
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	20.5	0.9160

Compare expression of checked genes

Lus10002736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.