Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26510 707 / 0 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT2G05760 573 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 561 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 505 / 3e-175 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 478 / 1e-164 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 472 / 4e-162 Xanthine/uracil permease family protein (.1) AT1G10540 466 / 1e-159 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 454 / 4e-155 Xanthine/uracil permease family protein (.1) AT1G65550 429 / 3e-145 Xanthine/uracil permease family protein (.1) AT5G25420 272 / 5e-86 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032758 [exp] 1004 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10030014 [exp] 562 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 561 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 515 / 5e-179 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 506 / 2e-175 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 488 / 8e-168 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 477 / 5e-164 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 476 / 8e-164 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 476 / 4e-163 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129400 [exp] 796 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.014G035800 [exp] 760 / 0 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.011G068200 [exp] 587 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 585 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 580 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.015G072600 [exp] 511 / 2e-177 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 502 / 4e-174 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 488 / 2e-168 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 485 / 2e-167 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 460 / 2e-157 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10002787 pacid=23169936 polypeptide=Lus10002787 locus=Lus10002787.g ID=Lus10002787.BGIv1.0 annot-version=v1.0 ATGGTGGAAACAGGGCATAACCACGGTCACAGCCACACCCCACCGTCGGCACAGCCGCCGGGCCCTCCACCGCTCGCCATGTCAAAGGGCCCGCTTTGGA CTCCCGCGGAACAACTTCAGCAGCTCCAGTATTGCATCCACTCCAACCCTTCTTGGGCTGAGACAACCTTGCTAGCCTTCCAGCACTATATTGTGATGCT TGGAACCATAGTAATAATTTCTAGTGATCTTGTGCCGCGAATGGGAGGTAGTCATGGTGACAAAGCCCGTGTGATTCAGACACTATTGTTTTTGGCTGGA ATTAATACGCTACTTCAGACGCTCTTTGGGACCAGGCTTCCTACTGTGATGGGAGCATCATTTGCCTACACTCTACCCGTCTTGTCAATCATAAAGGATC TATCTGATGAGAATTTCCCTGATGACCATGATAGGTTTGTTCACACTATGAGAACAATTCAAGGATCGCTGATCGTTTCTTCGTTCGTCAACATCATCTT GGGTTACAGTACAATAATCGGCAATCTGACTAAGCATTTTAGTGCCATAGTTATTGTCCCAGTGGTTGGTGTCGTTGGCCTCGGTCTCTTCGCCAGGGGC TTCCCGCTGCTTGCTAACTGTGTGGAGATTGGTCTGCCTATGCTCCTTCTGCTAGTTTTTTGTCAGTATTTGAAGCACCTACATTCGAGGGCTCATCCAA TACTCGAGAGATTTCACTTGCTTTTCTGCCTTGGAATTGTTTGGGCTTTTGCTGCTATCCTTACTGCTGCAGGTGCTTACAACAATGTTGCACCCATAAC TCAGCGTAGTTGCCGCACAGATCGTTCGTTTCTTATATCATCTGCCCCATGGGTTAGAGTTCCATATCCATTTCAATGGGGTCCTCCGATATTTAAAGCA AGCCATGTCTTTGGGATGATGGGAGCTGCATTAGTTACAGCTGCAGAGTCAACCGGGACATTCTTTGCTGCATCACGTCTAGCAGGAGCAACCCATACTC CTGCACATGTCGTCAGCCGAAGTATTGGTCTCCAGGGTATAAGCTTGCTGATCGATGGTCTCTTTGGTACTCTTGTTGGTACCACAGCATCCGTTGAAAA TGTGGGGCTTCTAGGGCTCACACACATAGGAAGCCGTAGAGTGGTGCAGCTCTCAACTGCTTTCATGTTCTTTTTCTCCATATTCGGGAAGTTTGGTGCG TTGTTTGCATCCATCCCGCTGCCAATTTTCGCTGCCATTTACTGTGTTGTATTTGGAATAGTTGCTGCGACTGGAATCTCATTCATGCAATTTGCAAACA GCAACTCCCTGAGAAACCACTATGTGTTAGGCCTCTCTCTGTTCCTTGGGATATCCATCCCTCAGTACTTTGTTGGCAACATCTCCATTGACGGCTATGG ACCCGTTAGAACAAATGGTGGATGGTTCAACGACATATTGAACACGATCTTCTCATCGCCTCCTGCTGTGGCCATAATCGTTGCGACGATTCTGGACAAC ACCCTGGAGAGGGAAGCAGTGAACGACAGAGGAATCCCGTGGTTGAAACCATTCCAGCACAGGAAAGGAGATGTTAGGACTGAGGAGTTCTACAGCCTTC CACTGAGAATACATCAATGGCTGCCTTCCAGGTTACGTTAG
AA sequence Show only first row Show all	>Lus10002787 pacid=23169936 polypeptide=Lus10002787 locus=Lus10002787.g ID=Lus10002787.BGIv1.0 annot-version=v1.0 MVETGHNHGHSHTPPSAQPPGPPPLAMSKGPLWTPAEQLQQLQYCIHSNPSWAETTLLAFQHYIVMLGTIVIISSDLVPRMGGSHGDKARVIQTLLFLAG INTLLQTLFGTRLPTVMGASFAYTLPVLSIIKDLSDENFPDDHDRFVHTMRTIQGSLIVSSFVNIILGYSTIIGNLTKHFSAIVIVPVVGVVGLGLFARG FPLLANCVEIGLPMLLLLVFCQYLKHLHSRAHPILERFHLLFCLGIVWAFAAILTAAGAYNNVAPITQRSCRTDRSFLISSAPWVRVPYPFQWGPPIFKA SHVFGMMGAALVTAAESTGTFFAASRLAGATHTPAHVVSRSIGLQGISLLIDGLFGTLVGTTASVENVGLLGLTHIGSRRVVQLSTAFMFFFSIFGKFGA LFASIPLPIFAAIYCVVFGIVAATGISFMQFANSNSLRNHYVLGLSLFLGISIPQYFVGNISIDGYGPVRTNGGWFNDILNTIFSSPPAVAIIVATILDN TLEREAVNDRGIPWLKPFQHRKGDVRTEEFYSLPLRIHQWLPSRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	0	1
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	1.4	0.9264
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	2.0	0.9143
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	7.7	0.9192
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	10.2	0.9123
AT5G11700			unknown protein		Lus10011144 [exp]	11.4	0.8853
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	12.0	0.9024
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	13.4	0.9035
AT1G60995			unknown protein		Lus10033791 [exp]	15.3	0.8922
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	15.7	0.8822
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	16.1	0.9153

Compare expression of checked genes

Lus10002787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.