Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 180 / 1e-56 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 169 / 2e-52 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 160 / 3e-49 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 148 / 1e-43 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 140 / 7e-41 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 139 / 9e-41 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT4G16750 136 / 3e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 138 / 4e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 132 / 2e-38 AP2_ERF ATERF38 ERF family protein 38 (.1) AT1G77200 128 / 2e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001601 [exp] 182 / 1e-57 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 159 / 2e-47 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 151 / 4e-45 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10025834 [exp] 140 / 4e-41 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 139 / 6e-41 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 130 / 2e-38 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 131 / 3e-38 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 131 / 8e-38 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10011123 [exp] 129 / 2e-37 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043900 [exp] 192 / 3e-61 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 182 / 3e-57 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 155 / 6e-47 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 152 / 1e-45 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 149 / 1e-43 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 148 / 1e-43 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 142 / 9e-42 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 140 / 3e-41 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 141 / 4e-41 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 137 / 1e-39 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10002801 pacid=23171446 polypeptide=Lus10002801 locus=Lus10002801.g ID=Lus10002801.BGIv1.0 annot-version=v1.0 ATGACGCAACTACCACGAAATTCAGAGCAGGAGAGCAGCTGCAACTCATTCTCATCCTCACCCCCGCCTTCTCCTTCTTCAACAATTACAAATTCCAACA ACAATAACAAGAAGATAAAGAGAATACGGGATGCCGCCAACAAGCACCCGCTGTACCGAGGGGTGCGAATGCGGAGTTGGGGGAAATGGGTGTCCGAAAT CAGGGAGCCCCGCAAGAAATCCAGAATTTGGCTGGGTACTTTCCCTACCCCTGAAATGGCTGCTCGAGCACACGACGTGGCCGCTCTCAGCATCAAGGGT GACTCAGCAATTCTCAATTTCCCAGACATAGCCACCCTCTTGCCCCGACCCGCTTCCCTCTCCCCACGTGATGTCCAAGCCGCAGCTACCAAGGCCGCCC AGATGGATCAATTCGACGCCAAACAGCTTGAAAATTCCGCCGCCGCCACCACAACTACCACCACATCCTCATCATCCAGCTCTTCACTCTCGTCTATGGT TTCGTCGATGGAATTGACCGAGGCGGAGGAGGAGGGGTTATGCGAGATTATAGAGCTGCCCAGTTTGGACCACTTTGGTGAGTTGGAAAGTGAGTTCGTG TTAGCTGACTCAGTGGAAGGGTGGCTATACCCACCACCATGGTTGACGACGGAGGACGACAGTTACAGTGGTGGTGGTGGTGGATTGTTTTGGAATTATT AG
AA sequence Show only first row Show all	>Lus10002801 pacid=23171446 polypeptide=Lus10002801 locus=Lus10002801.g ID=Lus10002801.BGIv1.0 annot-version=v1.0 MTQLPRNSEQESSCNSFSSSPPPSPSSTITNSNNNNKKIKRIRDAANKHPLYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG DSAILNFPDIATLLPRPASLSPRDVQAAATKAAQMDQFDAKQLENSAAATTTTTTSSSSSSSLSSMVSSMELTEAEEEGLCEIIELPSLDHFGELESEFV LADSVEGWLYPPPWLTTEDDSYSGGGGGLFWNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10002801 [exp]	0	1
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	11.1	0.7923
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	13.2	0.7655
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	13.5	0.8123
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	14.1	0.7804
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	18.2	0.7521
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	27.4	0.7642
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	29.4	0.7640
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	39.0	0.7756
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	39.4	0.7536
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	41.8	0.7435

Compare expression of checked genes

Lus10002801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.