Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75490 126 / 6e-35 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT2G38340 117 / 6e-31 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G18450 117 / 1e-30 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40340 112 / 2e-28 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT3G57600 110 / 5e-28 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G40350 106 / 7e-28 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT5G05410 102 / 5e-25 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT3G11020 99 / 2e-23 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT4G28140 93 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 89 / 8e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012226 [exp] 491 / 3e-176 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 124 / 4e-34 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 117 / 6e-32 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 113 / 3e-29 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 108 / 3e-27 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 105 / 2e-26 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 105 / 4e-26 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 100 / 3e-24 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 100 / 3e-24 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104200 [exp] 137 / 7e-37 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 115 / 8e-30 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 113 / 2e-29 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.008G073600 [exp] 112 / 6e-29 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 109 / 3e-28 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 107 / 1e-27 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.016G126100 [exp] 111 / 3e-27 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 104 / 7e-26 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.003G150800 [exp] 99 / 6e-24 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 94 / 7e-22 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10002855 pacid=23181320 polypeptide=Lus10002855 locus=Lus10002855.g ID=Lus10002855.BGIv1.0 annot-version=v1.0 ATGGAGGACTTTTCTAGTATTCAGAAGCGAACACAGAGGAGGAGGAGTTGCGGAGGAGAGGAATCGGTAGAGGAGACTTTAGAGAGATGGAAGAAGCAGA CGAAGCTGCTGAAGAAGAAGAATCCGCCGAAAGGATCAAAGAAAGGATGCATGAGAGGGAAAGGAGGGCCGGAGAATCTTACCTGTAGTTACAGAGGAGT CCGGCAGAGGACTTGGGGGAAGTGGGTGGCGGAGATACGGGAACCGGTGTTGATCACCGGTTCGACCAAGAAGAAAGGTAGCCGGCTCTGGTTAGGAACT TTCGACACGGCGGTTGAAGCTGCGATGGCCTACGACAACGCTGCCAGGTCCATGTACGGAGGCTCCGCGGTTCTTAACTTCCCCAACGGTGTTGTGAATG ATGATAATCAGTCTTCTTCTCCAGCGACGGAAACTGAAACAGAGATTTCGTCGGCTTCTTTGGACGCGGGAGTAGTGACGACGGAGGAATTGATCAAGCG GGAGGTTGCAGAAGAAGAACTTGAGGTTCAGAATACGAAGATGATGAACAGTACTGAAGGTGAAAACCTGCAGGACGAAGGATTAGACGTGGAGCTTGAG GAGTTCATGAAGTACTGTAGCAGCTGGGCGTTAATCTTAAATACAGAGGAAGAAGAAGAAGAAGAGAAAATGGTGAAATTAGAAGACGTCAATGGAAACG AGCAAACGAACAGTGGTGGCACCACCACTACTACTACTACTACTGATGCTGCTTACCATACGGATTTCGGCAGGGAGACGAGTCTGAATCCTGATGTGTA TCCCTGCGGCGGCTCGAAAGCTTTCGAGGAGCCATTCCGAATTGATACTGGTGTTGAGTGGTCAGGAGCTGAGGTGATAGATTGGAGTATGGTGGAAGAA GAGCCTGGAGTTCCTTCTGATATGATGCTATTTCACGACCCTGAATTTGGTTGCTATTAG
AA sequence Show only first row Show all	>Lus10002855 pacid=23181320 polypeptide=Lus10002855 locus=Lus10002855.g ID=Lus10002855.BGIv1.0 annot-version=v1.0 MEDFSSIQKRTQRRRSCGGEESVEETLERWKKQTKLLKKKNPPKGSKKGCMRGKGGPENLTCSYRGVRQRTWGKWVAEIREPVLITGSTKKKGSRLWLGT FDTAVEAAMAYDNAARSMYGGSAVLNFPNGVVNDDNQSSSPATETETEISSASLDAGVVTTEELIKREVAEEELEVQNTKMMNSTEGENLQDEGLDVELE EFMKYCSSWALILNTEEEEEEEKMVKLEDVNGNEQTNSGGTTTTTTTTDAAYHTDFGRETSLNPDVYPCGGSKAFEEPFRIDTGVEWSGAEVIDWSMVEE EPGVPSDMMLFHDPEFGCY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	0	1
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	1.4	0.8940
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10039277 [exp]	7.9	0.8525
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	12.2	0.8758
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	21.2	0.8329
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	28.1	0.8534
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	29.1	0.8414
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	36.8	0.8364
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10019790 [exp]	37.6	0.8582
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	55.6	0.8343
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	58.0	0.8291

Compare expression of checked genes

Lus10002855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.