Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32390 557 / 0 Nucleotide-sugar transporter family protein (.1) AT5G25400 550 / 0 Nucleotide-sugar transporter family protein (.1) AT2G25520 550 / 0 Drug/metabolite transporter superfamily protein (.1) AT5G11230 536 / 0 Nucleotide-sugar transporter family protein (.1) AT3G17430 271 / 2e-88 Nucleotide-sugar transporter family protein (.1) AT1G48230 255 / 1e-82 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 243 / 2e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G14410 236 / 2e-75 Nucleotide/sugar transporter family protein (.1) AT3G11320 101 / 3e-24 Nucleotide-sugar transporter family protein (.1) AT5G05820 100 / 4e-24 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002023 [exp] 623 / 0 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018339 [exp] 271 / 1e-88 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 259 / 9e-84 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 221 / 1e-69 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10009878 [exp] 103 / 5e-25 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 100 / 8e-24 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 99 / 3e-23 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 98 / 5e-23 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 97 / 2e-22 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028900 [exp] 580 / 0 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 568 / 0 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 271 / 7e-89 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 271 / 7e-89 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 248 / 3e-80 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.016G043200 [exp] 105 / 5e-26 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 104 / 1e-25 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 104 / 2e-25 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 103 / 1e-24 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 100 / 9e-24 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10002904 pacid=23148612 polypeptide=Lus10002904 locus=Lus10002904.g ID=Lus10002904.BGIv1.0 annot-version=v1.0 ATGGGAAAAGGCGGATCTGTCAGCGACTCCGTCCTTAAAAAGATCCTCCTTTCCTACACCTACGTCGCAATCTGGATCTTCCTCTCCTTCACCGTCATCG TCTACAACAAGTACATCCTCGACAAGAAGATGTACAATTGGCCTTACCCAATCTCCCTAACCATGATCCACATGTCCTTCTGCGCCACTCTCGCCTTCCT CCTCATCAAGGTCTTTAAAGTCGTCGAGCCCGTCGCCATGTCCCGCGAGATGTACATCTCCTCCGTCGTCCCCATCGGCGCTCTTTACTCCCTCTCATTA TGGCTATCCAACTCCGCATACATCTACCTCTCGGTATCCTTCATCCAGATGCTGAAAGCGCTCATGCCAGTCGCCGTCTACTCGATCGGCGTTGTCCTCA AGCGCGAGAGCTTCAAGACCGATACAATGGCGAACATGCTCTCGATCTCGTTTGGAGTCGCGATTGCTGCCTATGGTGAGGCCAGATTCGACGTCTGGGG AGTTTGTCTCCAGCTTGGAGCTGTAGCGTTTGAGGCGACTCGATTGGTGCTGATTCAGATCCTGTTGACCTCCAAGGGAATTACTCTGAATCCGATCACT TCTCTTTACTATGTAGCTCCTTGTTGCCTTGTGTTCCTGTTTGTGCCATGGATCTTCGTCGAGTATCCTGTTCTTAGGGAGACTTCGAGCTTCCATTTCG ATTTCGTCATCTTTGGTACCAACTCGCTATGTGCATTTGCGTTGAATCTAGCTGTGTTCTTGCTTGTGGGGAAGACGTCAGCGTTGACCATGAATGTGGC CGGTGTTGTGAAGGATTGGCTTCTGATTGCCTTCTCTTGGTCGGTGATCAAGGATACAGTGACGCCGATCAATCTGGTGGGTTATGGACTTGCATTTTTG GGGGTTGCGTATTACAATCATGCAAAATTGCAGGCACTCAAGGCTAAGGAAGCTCAGAAGAAGACTCAGCAAGCTGATGAGGAGCAAGGAAGGCTGCTGG AAGAGAGGGAAAGTGAAGGTAATGGCAAGAGAAGTGAATCCCAGAACTAA
AA sequence Show only first row Show all	>Lus10002904 pacid=23148612 polypeptide=Lus10002904 locus=Lus10002904.g ID=Lus10002904.BGIv1.0 annot-version=v1.0 MGKGGSVSDSVLKKILLSYTYVAIWIFLSFTVIVYNKYILDKKMYNWPYPISLTMIHMSFCATLAFLLIKVFKVVEPVAMSREMYISSVVPIGALYSLSL WLSNSAYIYLSVSFIQMLKALMPVAVYSIGVVLKRESFKTDTMANMLSISFGVAIAAYGEARFDVWGVCLQLGAVAFEATRLVLIQILLTSKGITLNPIT SLYYVAPCCLVFLFVPWIFVEYPVLRETSSFHFDFVIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLVGYGLAFL GVAYYNHAKLQALKAKEAQKKTQQADEEQGRLLEERESEGNGKRSESQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	1.4	0.9447
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	1.4	0.9582
AT3G28720			unknown protein		Lus10033020 [exp]	2.4	0.9365
AT5G57460			unknown protein		Lus10000167 [exp]	2.8	0.9353
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	4.2	0.9016
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	4.9	0.9052
AT2G20820			unknown protein		Lus10033715 [exp]	6.0	0.8917
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	6.5	0.9077
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	7.7	0.9139
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	8.8	0.9053

Compare expression of checked genes

Lus10002904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.