Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 519 / 7e-170 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46530 260 / 7e-74 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46710 243 / 6e-68 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 236 / 4e-65 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 235 / 4e-65 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 232 / 9e-64 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 230 / 7e-63 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 227 / 7e-62 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 224 / 3e-61 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58390 222 / 3e-60 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020016 [exp] 1580 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 1245 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 1215 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 951 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 881 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 508 / 2e-165 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 474 / 5e-157 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003521 [exp] 455 / 1e-153 AT3G07040 192 / 4e-55 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 414 / 4e-129 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 525 / 2e-172 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 435 / 9e-138 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 426 / 3e-134 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 425 / 8e-134 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 424 / 2e-133 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 419 / 1e-131 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 416 / 1e-130 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 415 / 8e-130 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 413 / 5e-129 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 409 / 5e-128 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10002945 pacid=23164953 polypeptide=Lus10002945 locus=Lus10002945.g ID=Lus10002945.BGIv1.0 annot-version=v1.0 ATGGCAGCGATACCCATTGATTTCCTGGCGCAAAAGATGGAGGCTTTTCTGGTAAAGGAAACAACTTTATACGGAGAAGCTCGAGACCAAGTGGAGGAAA TGAAGCAAGAGCTTATGAGCATGAGGGCATTCTTGGAGGATGCTGAAGACATCAACTCAAATGCTATCAACTCCAAATCAAAGCAAACCCAAGTTTCCCA AGTGAGGGATCTAGTCTACGATGTCGAAGACATCATCGACCGGTTCACCTACCACATTAACAAATGGCGAGGACGACGTACATTCGTATGGTACGTTAAG AGAACCGTTGGCTTCCCCAAGTACTTCTGGGAAAGACGACAGATTTCCACCGGACTCCGTCAGCTCAATGGCATGATCAAAGCTATACCGGAGAGGTATC AACGGTATCCAGTTGATAATGTTCAAGAATCCACTAAGGGTTCTTCAACTGGAGGAGCTGTGTTCAAGGCAGAGTCAGCTCTGTTTCTCAATGAGGAGGA TCTTGTTGGGATTGAGGAACCTAAACAAGTGCTTATGGATTTGCTCACCAATGGAGATTCGAAACGAACAACTGTCTCGGTGGTTGGCATGGGTGGCTCT GGTAAGACTACTCTAGTAGCTAACTTGTTCAACTCTGCTGTTGTGAAACAAAGCTTTGATTGTTGTGCTTGGATAACCGTCTCCCAAACTTTCAACATTG ATGAGCTCTTGAGAAGCCTAATCAAGGAGATCAACAAATCCGAGACGGGAGACAAGATTGATCAAATAACGGATTTGAGTGCGATGAGTTATCGAGAGCT TTTGGAGAAGCTTGTTGTTTATTTGGAGAATAGAAGTTATCTAGTTGTTCTTGATGATGTATGGTCTACTGATGTTTGGAGCCAGATCAAAGTGTCTCTT CCGAACGGGCAAAAGGGTAGTCGGGTCATGATCACCACCCGGATGCACGATGTGGCTTCCCATTCGTCTTCTGAAGTTGGAAGCCATGTCTACAATGTTA AGCCACTCAAAAAGGACAAAGCTTGGGAGCTTTTCACCATGAGAGCTTTCTCTTCAAAAAGCTCCAACAAGTGTCCTCTTGAGCTTCAAGCTATAGCCAA TGAGTTTGTGGAGAAATGTGAAGGTTTGCCTCTAGCCATTGCTTCGATAGGTGGTCTCTTGGCTACGAAACCGAGCTCAATAGGGGCGTGGATGACGGTG TTTAAGAATCTGCAGTGGGAGTTAAACAACAATCAAATGCTTCAACCTATAAAAAGCATCCTTCTTTTGAGCTACAACGATCTTCCGTATAGGTTGAAGT ATTGCTTCCTGTACTTTTCCTTGTTTCCGGAGGATTACAAGATTTGGTGTGATAAGCTTGTTAGGTTGTGGATGGCTGAAGGATTTGTGGAGGTGAATGA CAACGGGGTGTCACCTGAAGATGTTGGAATGGGATACATTAGAGAATTGATTGGTCGGAACATGTTCCAAGCTGTGAGTTGGGACATGTTTGGTAACCAT GGCAAGTGTAAGATGCACGATTTGTATAGAGAGATTGCTCTTACAATATCAAAGCAAGAGAAGTTCTGCTTAGTGTATGATTATGGAAATCGTCAAACAC TGCCTAAAGAAGGTAATAAATCCACTCATCGACGTTTGTCCATTCAACGTGTAGACAATGAACAAGAGCTAACGAACTTAGTGGAAGGAATGACTAGCCT TCGCACTTTCCTCTTGTTTGCTAAGAAAGGCTCTTTAGTTTCTTTGAGTAAGTTGTCATTGGGGCGTGCTCGACTTGTTCGAATTGTAGATGTGGAAGAT GCTCCATTGGAGAAACTATCCGAGGATAACTCAGCTCTGCTTAACTTGAAGTACTTGGGGTTGAGTAATACTAAGGTTAAGAGCCTCCCGGCAAAGACTA TTGGGAAGCTATCCAGCCTTCAAACTCTGGATATTTCATACACCGATGTCGAAGTTCTTCCAAGTGAAATCGTAAAATTGGAGAGCCTTCGCCACTTGTT ATCGGGGCATCTCAGCTTCGGAAAGCTACTCAAGTACAACAAATTGAAAGGTGTAAGACTTCCTATAGGTTCAGACATTAGCTCTTTGGAAAACTTGCAG ACGCTACGATTAGTCGAAGCAAGTGGAGATTTGATGAAACAGCTGAAGAAGATGGTTCAGCTTGTACAACTTGGGATCACGAACTTGGAAGGACAAGCTC AAATAGAGGACCTTTGCTCCTCACTTCAAGGTATGCTTTTGCTAAGATGGTTAGTTGTGATGGCAAGCAATGAGGATGAACTCCTCCAAATGGATTCTCT TAATGAATCCACAACTCCTCCACTTCAACTTCTTGAATATCTCATCCTATGTGGGAAACTAAAGAGCTTCCCTGACTGGATCCGATCGCTTCACAGCCTG ACAACCATCCGATTGATATGGAGCAGGCTGCCGGTGGAGGAGGATCCGGTCGTACATCTCCAAGGGATGGATAACTTGAGGAATGTCTGGTTTAACAATG CATATCAAGGGAAAGAGTTGAGCTTTACTTCAGGGTTTCGCAACCTCAGGGCGCTGGCTTTGGCTAATTTGCCTACACTAGAGAGGCTAACAATCGGTGA AGGAGGCGTGATGCCGGTTCTCAGAATCATTTTGATTAGGGACTGTCTAAAGCTGAAGATAATATCAAAGGGTATCAAATCACTGGCTAAACTCGAGGAG TTGAGGCTCGAGGATGTTTCAGCACAGATGGTGGAGAGCATTCGTGGACCTGATCGTGCCAATTTTCGACACATACTCCTCATCTCATGTAAGTACTATT CTTCAACTGGAAGTTACATCACAGAAAAACTAGTGCTTTAG
AA sequence Show only first row Show all	>Lus10002945 pacid=23164953 polypeptide=Lus10002945 locus=Lus10002945.g ID=Lus10002945.BGIv1.0 annot-version=v1.0 MAAIPIDFLAQKMEAFLVKETTLYGEARDQVEEMKQELMSMRAFLEDAEDINSNAINSKSKQTQVSQVRDLVYDVEDIIDRFTYHINKWRGRRTFVWYVK RTVGFPKYFWERRQISTGLRQLNGMIKAIPERYQRYPVDNVQESTKGSSTGGAVFKAESALFLNEEDLVGIEEPKQVLMDLLTNGDSKRTTVSVVGMGGS GKTTLVANLFNSAVVKQSFDCCAWITVSQTFNIDELLRSLIKEINKSETGDKIDQITDLSAMSYRELLEKLVVYLENRSYLVVLDDVWSTDVWSQIKVSL PNGQKGSRVMITTRMHDVASHSSSEVGSHVYNVKPLKKDKAWELFTMRAFSSKSSNKCPLELQAIANEFVEKCEGLPLAIASIGGLLATKPSSIGAWMTV FKNLQWELNNNQMLQPIKSILLLSYNDLPYRLKYCFLYFSLFPEDYKIWCDKLVRLWMAEGFVEVNDNGVSPEDVGMGYIRELIGRNMFQAVSWDMFGNH GKCKMHDLYREIALTISKQEKFCLVYDYGNRQTLPKEGNKSTHRRLSIQRVDNEQELTNLVEGMTSLRTFLLFAKKGSLVSLSKLSLGRARLVRIVDVED APLEKLSEDNSALLNLKYLGLSNTKVKSLPAKTIGKLSSLQTLDISYTDVEVLPSEIVKLESLRHLLSGHLSFGKLLKYNKLKGVRLPIGSDISSLENLQ TLRLVEASGDLMKQLKKMVQLVQLGITNLEGQAQIEDLCSSLQGMLLLRWLVVMASNEDELLQMDSLNESTTPPLQLLEYLILCGKLKSFPDWIRSLHSL TTIRLIWSRLPVEEDPVVHLQGMDNLRNVWFNNAYQGKELSFTSGFRNLRALALANLPTLERLTIGEGGVMPVLRIILIRDCLKLKIISKGIKSLAKLEE LRLEDVSAQMVESIRGPDRANFRHILLISCKYYSSTGSYITEKLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10002945 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	3.6	0.9135
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	9.3	0.9075
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	23.6	0.8496
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	42.0	0.8401
AT2G02410			unknown protein		Lus10042400 [exp]	88.4	0.8066
					Lus10005655 [exp]	124.8	0.8381
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	137.9	0.8383
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	188.9	0.8039

Compare expression of checked genes

Lus10002945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.