Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07840 334 / 7e-108 Pectin lyase-like superfamily protein (.1) AT3G07830 333 / 1e-107 Pectin lyase-like superfamily protein (.1) AT3G07820 330 / 2e-106 Pectin lyase-like superfamily protein (.1) AT5G48140 327 / 3e-105 Pectin lyase-like superfamily protein (.1) AT3G14040 311 / 1e-98 Pectin lyase-like superfamily protein (.1) AT3G07850 306 / 2e-96 Pectin lyase-like superfamily protein (.1) AT1G17150 280 / 4e-87 Pectin lyase-like superfamily protein (.1) AT2G33160 275 / 3e-82 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G02790 265 / 4e-81 PGA4 polygalacturonase 4 (.1) AT1G78400 262 / 2e-80 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011031 [exp] 589 / 0 AT5G16770 223 / 3e-70 myb domain protein 9 (.1.2) Lus10043088 [exp] 357 / 4e-117 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 340 / 6e-110 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 338 / 1e-109 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 338 / 1e-109 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 338 / 1e-109 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 314 / 1e-97 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 306 / 1e-96 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 306 / 2e-96 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066800 [exp] 394 / 4e-131 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 394 / 4e-131 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 394 / 4e-131 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 391 / 4e-130 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 391 / 4e-130 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 391 / 4e-130 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 389 / 2e-129 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 360 / 4e-118 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 300 / 2e-94 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202200 [exp] 291 / 3e-91 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28 CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003001 pacid=23176160 polypeptide=Lus10003001 locus=Lus10003001.g ID=Lus10003001.BGIv1.0 annot-version=v1.0 ATGGTGAGGCCACCCTGCTGTGGAGAGGAAGATAAGATGATGGTCAAGAAAGGTCCATGGACTGCTGAGGAAGACTCAAAGCTCGTAGACTACATCGCGA ACAAGAAGGGACGGCACGCTAACTGGAAGCTCCTGCCGAAGCTCGCTGGCTTGGACCGCTGCGGCAAGAGTTGCCGGTTGCGGTGGACGAACTACCTCCG CCCCGGCATCAAGCGGGGCGGGTTCGATGATGAGGAGGAGCGCCTCGTCATCGACCTCCACAAGACCCTCGGTAACAAGTGGTCGAAAATTGCAACACAC TTGCCAGGAAGGACGGATAACGAGATAAAAAACTACTACAACACACACATAAGGAGGAAACTCTTGCGGATGGGGATAGACCCACAGACGCACAAGCCAA GAACCGATCATCTTCATCAACAACAAGACATCGCTAATCAAATCGTCAACTTCTCTCAGCTGATCGGGGCCGCCAGTCAGCTGAGCAACATGATGAACAT CGACTCGCCGTCTTCGACGTTGAACATTCTCGAGAATTTACTAGTCGCTGCCTCTTCGACCATGCAGCAGCAAATTGTAACACCATTTGTGTTACAACAA CTGCTGCTTAATAATAACCAAACTATCTCTCATTCACTGCCACTCCTCCTGCGGGGACAAGATTCTGCCCCGACAGGAACATTGTCTCTGCAAGACCCGT TGTTACTATTGGCTAGGGTATTGAACCCGGTAGAAAATTTGGCTACAACGGATTACCATAAACCGGTTTATATCGACGATGATAAAGATAAATCAACGAG CGAAAACGTTGTCAAAAACTTGATAGTCAAGAAGGAACCCATGATGCCAGAATTGGTCTCATGGGAGGCTTCACCGGAGACATCTTCGTCGTCCCTTGTA CACAACAACCATCAAGAGAATGATCATTGTTCAAAATTTCCGGACCAGACACCGACATTATTTGACTCCCCAGTCGCATCGATCGACATTGATAATCAAC TCGAAGCTTGGGAGAGACTGCTGATGATGGATGATGACTTCACCGGCGGCGAAGGTTTCTTCTCGTCGACGTGGACAGATGGTGCTCAAGATAATGTTCT TACTCTATTTGATATCAACAAGTACGGTGCCGTTTGCGATGGCAAAACAGACTCTGTGGATGCATTCACCAAGGCGTTCACGGCGGCTTGTGAGTCGCCA ACTCCGGCATGCGTGGTGGTGCCACCGGGGAATTACCGTTTGGGAATAATGACCCTAAAAGGACCGTGCAAATCACCAATCACATTTCAAGTCGATGGAG TTCTGTTGGCCCCGCCGGAGATTGAAGGTGATAGTTGGGTTACTTTCAATTACATGGAACATTTCACCCTTACCGGCAAGGGCACGTTTGATGGCATTGG TAGGGATGCATGGACTAAAAACGACTGTCACAAGAACAAGAAATGCAAGCTCCTTCCGTTCAATTTGAGGTTCAACTTCATAAAGCAAGCGCGGATAGAA GGGGTGACATCCAAGGACAGTAAGAGCTTCAATGTCAACGTCCTGGGTTGCGAGAATATCACCTTCAGCAACTTCCGCGTGTTAGCCCCGGACGAAAGCC CCAACACTGACGGAATCCACATGGGAAGATCTATTGGAGTCAACATCGTAGATTCCATCTTCGAGACGGGCGATGACTGCATATCCGTAGGAGACGGCAT TGAGCAACTGAGGATCGAGAACGTCAAGTGTGGACCTGGGCATGGAATTAGCATTGGCAGCCTTGGTGGGAGCCCTGAGGAGAAGCCTGTTGTGGGAGTG TTCGTCAAGAACTGCACATTGACCAACACTACAAATGGGGTAAGGATTAAGACAAAACCGACTTCTTTCCCCGGCATCGTAACTGATATCCATTTTGAAG ACATCGTAATGAATAACGTCTGGAATCCAATCATAATTGACCAAGTTTACTGCCCTCACAATTTGTGTGCGAATAAGCTGCCATCAAAAGTTGCGCTAAG CAAAGTGTTCTTCAAGAATATACGCGGGACGTCAAGAGATGAACATGTGATCACCATGAATTGCAGTCCAGAGGTGCCGTGCGCGGATGTGGAAGTGCAA GATGTGGATCTTACTTACTCAGGACCAAGAGGCCCTGCTCAAGCCGTTTGCACAAATGTCAAGCCAAGAATTATCGGCAAGATGAACCCAACTTGTTAG
AA sequence Show only first row Show all	>Lus10003001 pacid=23176160 polypeptide=Lus10003001 locus=Lus10003001.g ID=Lus10003001.BGIv1.0 annot-version=v1.0 MVRPPCCGEEDKMMVKKGPWTAEEDSKLVDYIANKKGRHANWKLLPKLAGLDRCGKSCRLRWTNYLRPGIKRGGFDDEEERLVIDLHKTLGNKWSKIATH LPGRTDNEIKNYYNTHIRRKLLRMGIDPQTHKPRTDHLHQQQDIANQIVNFSQLIGAASQLSNMMNIDSPSSTLNILENLLVAASSTMQQQIVTPFVLQQ LLLNNNQTISHSLPLLLRGQDSAPTGTLSLQDPLLLLARVLNPVENLATTDYHKPVYIDDDKDKSTSENVVKNLIVKKEPMMPELVSWEASPETSSSSLV HNNHQENDHCSKFPDQTPTLFDSPVASIDIDNQLEAWERLLMMDDDFTGGEGFFSSTWTDGAQDNVLTLFDINKYGAVCDGKTDSVDAFTKAFTAACESP TPACVVVPPGNYRLGIMTLKGPCKSPITFQVDGVLLAPPEIEGDSWVTFNYMEHFTLTGKGTFDGIGRDAWTKNDCHKNKKCKLLPFNLRFNFIKQARIE GVTSKDSKSFNVNVLGCENITFSNFRVLAPDESPNTDGIHMGRSIGVNIVDSIFETGDDCISVGDGIEQLRIENVKCGPGHGISIGSLGGSPEEKPVVGV FVKNCTLTNTTNGVRIKTKPTSFPGIVTDIHFEDIVMNNVWNPIIIDQVYCPHNLCANKLPSKVALSKVFFKNIRGTSRDEHVITMNCSPEVPCADVEVQ DVDLTYSGPRGPAQAVCTNVKPRIIGKMNPTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	0	1
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	3.6	0.9014
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10021372 [exp]	5.5	0.8450
					Lus10012067 [exp]	6.0	0.8977
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	7.2	0.8839
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10036367 [exp]	7.9	0.8443
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	10.4	0.8882
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	19.4	0.8067
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	21.5	0.8197
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	22.1	0.8773
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	22.4	0.8658

Compare expression of checked genes

Lus10003001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.