Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 1411 / 0 LON2 lon protease 2 (.1) AT5G26860 462 / 8e-148 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 438 / 1e-138 LON4 lon protease 4 (.1) AT3G05780 425 / 1e-133 LON3 lon protease 3 (.1) AT5G47320 122 / 2e-31 RPS19 ribosomal protein S19 (.1) ATCG00820 52 / 4e-08 ATCG00820.1, RPS19 ribosomal protein S19 (.1) AT5G09490 45 / 4e-05 Ribosomal protein S19 family protein (.1) AT5G43640 45 / 4e-05 Ribosomal protein S19 family protein (.1) AT5G17730 46 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G09500 44 / 0.0001 Ribosomal protein S19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011038 [exp] 1661 / 0 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10040131 [exp] 1489 / 0 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 1044 / 0 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 471 / 1e-150 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10010919 [exp] 380 / 4e-117 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10001083 [exp] 354 / 8e-116 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10027711 [exp] 184 / 3e-54 AT5G47320 123 / 3e-36 ribosomal protein S19 (.1) Lus10008692 [exp] 49 / 1e-06 AT5G09490 162 / 2e-52 Ribosomal protein S19 family protein (.1) Lus10026127 [exp] 48 / 4e-06 AT5G09500 244 / 4e-84 Ribosomal protein S19 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086000 [exp] 1479 / 0 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.001G148400 [exp] 1462 / 0 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.005G017600 [exp] 428 / 3e-134 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 330 / 7e-98 AT5G26860 1467 / 0.0 lon protease 1 (.1) Potri.013G129600 [exp] 115 / 9e-30 AT5G47320 103 / 2e-28 ribosomal protein S19 (.1) Potri.019G101950 [exp] 79 / 2e-17 AT5G47320 74 / 1e-17 ribosomal protein S19 (.1) Potri.011G074301 [exp] 62 / 2e-11 ATCG00820 168 / 2e-56 ribosomal protein S19 (.1) Potri.005G154674 [exp] 60 / 5e-11 ATCG00820 167 / 9e-56 ribosomal protein S19 (.1) Potri.013G137688 [exp] 60 / 5e-11 ATCG00820 169 / 1e-56 ribosomal protein S19 (.1) Potri.019G013302 [exp] 44 / 3e-05 ATCG00820 109 / 7e-33 ribosomal protein S19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00203 [flax] [poplar] Ribosomal_S19 Ribosomal protein S19 CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10003009 pacid=23176141 polypeptide=Lus10003009 locus=Lus10003009.g ID=Lus10003009.BGIv1.0 annot-version=v1.0 ATGGCGGATTCGGTGGAGCTCCCCAGTCGGTTGGCGATCCTCCCTTTCAGGAACAAGGTCCTTTTGCCCGGCGCCATCATCCGCATCCGCTGCACTTCTC CCAGCAGTGTGAAATTGGTGGAGCAAGAGCTATGGCAGAGAGAGGAGAAGGGTATGATTGGCATTTTGCCTGTTCAGGACACTGCTGAAGCGTCCGTCGG GTCAATGTTGTCTCAAGGAGTTGGAAGTGAGGCAGGGGGTGATAGAAGCTCGAAAGCTCAAGTGGGGCCCACCTCCGAGAGTCTCAAAGTTGATGGTAAA AACCAGCAGGAAGTTATCCGGTGGCACAATAGGGGAGTTGCTGCTCGTGCTTTGCATTTGTCGAGAGGGGTGGAGAAGCCGAGTGGGAGAGTGACGTACA TTGTTGTGCTTGAAGGTTTGTGCAGGTTCAGTGTTCAGGAACTTAGTAAGCGAGGGATGTATTACACTGCCCGGATATCTCCGGCTGAGATGACAAAGGC TGAGATGGAACAAGTGGAGCATGATCCTGACTTCGTCACACTGTCTCGTCAGTTCAAAGCAACTGCCATGGAACTTATTTCAATTCTAGAGCAGAAACAG AAAACTGGTGGTCGGACCAAAGCTCTTTTGGAGACGGTTCCTGTTCACAAGTTGGCCGATATATTTGTTGCTAGCTTTGAGATAAGTTTCGAAGAGCAGT TGTGTATGTTGGATTCTGTTGATTTGAAAGTAAGGCTTTCGAAAGCTACTGAGCTGGTTGACAGGCATTTACAGTCAATTCGGGTAGCAGAAAAAATTAC TCAGAAGGTTGAAGGACAGTTATCAAAGTCTCAGAAAGAGTTTCTTCTACGTCAGCAGATGCGTGCTATAAAAGAGGAGCTTGGTGACAATGATGATGAT GAGGATGATGTCGCTGCCCTAGAAAGAAAGATGCAAAGTGCAGGAATGCCTTCAAATGTCTGGAAACACGCACAGAGGGAATTGCGGCGGCTCAAGAAGA TGCAACCTCAACAACCCGGATATAACAGCTCACGAGTGTATTTGGAGCTGCTTGCTGAACTTCCATGGCAGAATGCTAGTGAAGTATCTGAACTGGACAT AAAAGCTGCGAAAGAACGTCTGGATAATGACCACTATGGTCTTGTGAAGGTCAAGCAACGAATTATAGAATATCTAGCAGTGCGCAAGCTTAAACCGGAT GCACGAGGTCCAGTATTGTGTTTTGTCGGCCCACCAGGTGTCGGGAAAACTTCTCTGGCATCATCTATTGCTGCTGCCCTAGGCCGAAAATTCATTCGCA TCTCTCTTGGGGGTGTTAAAGACGAGGCTGATATCAGAGGGCACAGAAGAACGTACATCGGGAGCATGCCAGGGCGGCTTATTGATGGATTAAAGAGAGT GGGTGTTTGCAATCCGGTCATGCTTCTGGACGAGATTGACAAGACTGGTTCTGATGTGCGTGGCGATCCTGCATCAGCTCTGCTCGAAGTTCTAGATCCT GAACAGAACGGGACATTCAATGATCACTATTTGAATGTTCCTTTCGACCTGTCTAAGGTGATTTTCGTGGCAACAGCAAATCGGGCGCAACCTATTCCAG CTCCACTGCTGGACCGTATGGAAGTTATTGAGCTTCCAGGTTACACTCCTGAAGAAAAGCTCAGAATCGCCATGCGGCATCTGATACCTCGAGTGTTGGA CCAACATGGCTTGACCTCTGATTTCTTACAAATTCCAGAGGATGCGGTAAAAATTGTAATCCAGAGATACACCAGAGAGGCCGGCGTTCGGAACCTAGAG AGACACTTGGCTGCCTTGGCTCGTGCAGCAGCTGTCAGACTTGCAGAGCAAGACCAAACCGTGCCGCTAAGCAAGGATGTTCAACGGCTTGCCACACCAT TGCTGGAGAACAGACTTTCCGATGGAGCTGAAATGGAAATGGAAGTAATACCAATCGGCGAAAACGGTCATGAGATCTCCAATGGTTTCAGAGTTGCCTC ATTGGTTGTGGATGAGGCCATGCTTGAGAAAGTTCTTGGGCCTCCAAGATTCGACGATAAAGAAGCTTCAGAACGTGTCACCAGTCCAGGTATCACCGTT GGGCTTGTTTGGACTGCATTCGGTGGGGAAGTCCAGTTTGTTGAGGCCACATCAATGGCCGGAAAGGGTGAGTTGCATCTCACCGGACAGCTTGGAGACG TTATCAAGGAATCCGCACAGATAGCATTGACTTGGGTACGAGCCAGGGCAACTAATTTCAAGTTGGCGGATGGTCATGCAATTAGTCTTCTTGAAGGCAA GGACATCCACATACATTTCCCTGCGGGTGCTGTACCTAAGGATGGGCCTTCAGCGGGTGTGACACTTGTGACGACTCTTGTTTCGTTGTTTAGTCAGCAG CGAGTACGAGCTGATACAGCAATGACCGGAGAAATGACGTTGAGAGGCCTTGTGCTTCCTGTGGGTGGGATTAAGGATAAGATATTGGCTGCTCATCGTT ACGGAATCAAGCGAGTGATTCTACCGGAGCGAAACCTCAAGGACTTGGTGGAAGTACCGGCTGCCGTCCTTGCCAATCTAGAGGCTCCTCCTATGGCAAG GGCAATGTGGAAGGGACCTTTCGTTGATGCTTTCCTGTTGAAGTTGAAGAACAAGGGGGAACCACTTGCCAACAGGAAAATCTGGTCTCGCAGGTCGGTC ATCTTGCCGGAGTTTCTGAATTCGACAGTCAGGATATACAACGGTAAAACATTCGTCCGCTGCAAGATTACTGAAGGGAAAGTGGGTCACAAGTTTGGGG AGTTTGCACTGACGAGGAGGAGGAAGAAAATGAGAGGCAGTGACGCCAAAGGTGCTAATAAGAAGGTTGCTGGGAAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10003009 pacid=23176141 polypeptide=Lus10003009 locus=Lus10003009.g ID=Lus10003009.BGIv1.0 annot-version=v1.0 MADSVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGMIGILPVQDTAEASVGSMLSQGVGSEAGGDRSSKAQVGPTSESLKVDGK NQQEVIRWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSKRGMYYTARISPAEMTKAEMEQVEHDPDFVTLSRQFKATAMELISILEQKQ KTGGRTKALLETVPVHKLADIFVASFEISFEEQLCMLDSVDLKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDD EDDVAALERKMQSAGMPSNVWKHAQRELRRLKKMQPQQPGYNSSRVYLELLAELPWQNASEVSELDIKAAKERLDNDHYGLVKVKQRIIEYLAVRKLKPD ARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP EQNGTFNDHYLNVPFDLSKVIFVATANRAQPIPAPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLTSDFLQIPEDAVKIVIQRYTREAGVRNLE RHLAALARAAAVRLAEQDQTVPLSKDVQRLATPLLENRLSDGAEMEMEVIPIGENGHEISNGFRVASLVVDEAMLEKVLGPPRFDDKEASERVTSPGITV GLVWTAFGGEVQFVEATSMAGKGELHLTGQLGDVIKESAQIALTWVRARATNFKLADGHAISLLEGKDIHIHFPAGAVPKDGPSAGVTLVTTLVSLFSQQ RVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLANLEAPPMARAMWKGPFVDAFLLKLKNKGEPLANRKIWSRRSV ILPEFLNSTVRIYNGKTFVRCKITEGKVGHKFGEFALTRRRKKMRGSDAKGANKKVAGKKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47040		LON2	lon protease 2 (.1)		Lus10003009 [exp]	0	1
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	3.7	0.8040
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	5.8	0.7682
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	5.9	0.7840
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	9.2	0.7854
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	11.0	0.8023
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	12.4	0.7782
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	12.4	0.7427
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	15.2	0.7963
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	17.9	0.7585
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	20.8	0.7948

Compare expression of checked genes

Lus10003009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.