Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18020 375 / 1e-124 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G44190 116 / 3e-28 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT2G20570 102 / 3e-23 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G58080 86 / 3e-17 GARP ARR18 response regulator 18 (.1) AT3G16857 81 / 8e-16 GARP ARR1 response regulator 1 (.1.2) AT4G16110 80 / 1e-15 GARP ARR2 response regulator 2 (.1) AT2G25180 78 / 7e-15 GARP ARR12 response regulator 12 (.1) AT2G01760 76 / 1e-14 GARP ARR14 response regulator 14 (.1) AT2G40970 74 / 2e-14 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G59570 74 / 2e-14 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011044 [exp] 943 / 0 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 674 / 0 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10040109 [exp] 671 / 0 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10039883 [exp] 118 / 2e-28 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 114 / 6e-27 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 105 / 4e-24 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10037719 [exp] 84 / 1e-16 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 84 / 1e-16 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10036303 [exp] 81 / 5e-16 AT2G25180 294 / 4e-92 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146200 [exp] 640 / 0 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 597 / 0 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.017G015800 [exp] 125 / 5e-31 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.007G136901 [exp] 122 / 6e-30 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.006G262100 [exp] 84 / 7e-17 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.006G188000 [exp] 83 / 1e-16 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 82 / 3e-16 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G213500 [exp] 81 / 7e-16 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G021300 [exp] 81 / 7e-16 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.010G001000 [exp] 81 / 1e-15 AT4G16110 602 / 0.0 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003013 pacid=23176155 polypeptide=Lus10003013 locus=Lus10003013.g ID=Lus10003013.BGIv1.0 annot-version=v1.0 ATGGTTTGCACTGCTAATGATTTGTCAGAATGGAAGGACTTCCCAAAGGGTCTTAAGGTCCTTCTTCTTGATGAGGACATCAATTCAGCTGCTGAGATAA AATCTCAGCTTGAATCAATGGACTATTCTGTTGCTGCTTTCTGCAATGAGAAAGAAGCCTTGTTAGCATTTTCAGACAAGCCTGAAAGCTTCCATGTTGC CATTGTTGAGGTGACTGTAGGCATGACTTTCCTGGAGAGTGCAAAGGATTTGCCTACTATTATGACTTCCAACATCAACTGCCTTAGCACAATGATGAAA TGCATTGCGCTAGGAGCAATGGAGTTCCTTCATAAGCCACTCTCAGAAGACAAACTAAGGAACATATGGCAGCATGTAGTTCATAAGGCTTTTAATGCAG GACAGGAATCATTAAATCCTAAGAAAGATTCGGTAGTCTCCACGTTGCAGCTCAAAGTAGAGACCGAGGAGGCAGAGAATTTACCTCCGGTTGATGATGA AAATAACTCTGATAGCAATAAGTATCCGGCTCCCTCGACTCCTCAGCTTAAACAAGGTAGCCGGTTATTGGATGATGGGGATTGTCAAGACCATACTAAT TGCTCAACTGAGCAAGAAGGGGAATCTAAATCCGTCGAAACTACATTTGCAATGGCCGAAACGAGTGTACAGGTGGATACCGAGAATTTGACAGATGGCA AAGCCCTCAAAGAAGAGGATGACTTGTCCACCGGTGCCAAGACCGAGAATCTCAAGAGTCTTTGTCCTCAAGATAGCCACGACAAGCCCGATAGTAGTAA TGAAGACAGATCTAAATCATCTAGTCTTAATACTACTTCAGGAGTGACCAAAGCTAATCGGAAGAAAATGAAGGTAGATTGGACGGCTGATCTGCACAGA AAGTTTGTGCAGGCCGTGGAGCAACTAGGTGTAGATCAAGCCATTCCGTCGAAGATACTCCAGCTAATGAAAGTTGAAGGCTTGACAAGGCATAATGTAG CAAGCCATCTTCAGCAGAAATATCGAATGCATAAGAGGCACATCTTACCGAAATCGGAAGATAGGAGGTGGCCAGTACAACATAAAGATCAACCGAAAAG GAGTTACTATTCCCATAAACCACCAATAATGGCTTACCCTCCTTCTTATCATCAACAGCAGCATTCTAATCATGCTTTCCCACCTCCAATGTGGGGGGCA GCAGCAGCTGGTACTCACCATGTTCAAATGTGGGGCCCTCCTTCCCATTCACCATGGACATCATTAACAGATAGTTGGCATTGGAAACCTTACCCCCCGT TACATGCAGATACATGGGGTTGCCCTGTGATGCCACCACAAATGCCTTACTCTTACTTGCCACAAAATCAACCAGGGTTTCATGGTGCAGGCATTTCCGA TAACCAGTGTAGCAAACCACAAAATTCTTTTGACCTACAGCCGGCAGAGGAAGTGATTGACAAAGTAGTGAAAGAAGCCATCAGCAAGCCATGGCTGCCA TTGCCCTTAGGACTCAACCCTCCTTCCACTGACAGTGTCCTAGATGAACTCTGTAAGCAAGGCATCATCTCCACCGTTCCTTGCAACGACGGCTCTCATT CATCTTGA
AA sequence Show only first row Show all	>Lus10003013 pacid=23176155 polypeptide=Lus10003013 locus=Lus10003013.g ID=Lus10003013.BGIv1.0 annot-version=v1.0 MVCTANDLSEWKDFPKGLKVLLLDEDINSAAEIKSQLESMDYSVAAFCNEKEALLAFSDKPESFHVAIVEVTVGMTFLESAKDLPTIMTSNINCLSTMMK CIALGAMEFLHKPLSEDKLRNIWQHVVHKAFNAGQESLNPKKDSVVSTLQLKVETEEAENLPPVDDENNSDSNKYPAPSTPQLKQGSRLLDDGDCQDHTN CSTEQEGESKSVETTFAMAETSVQVDTENLTDGKALKEEDDLSTGAKTENLKSLCPQDSHDKPDSSNEDRSKSSSLNTTSGVTKANRKKMKVDWTADLHR KFVQAVEQLGVDQAIPSKILQLMKVEGLTRHNVASHLQQKYRMHKRHILPKSEDRRWPVQHKDQPKRSYYSHKPPIMAYPPSYHQQQHSNHAFPPPMWGA AAAGTHHVQMWGPPSHSPWTSLTDSWHWKPYPPLHADTWGCPVMPPQMPYSYLPQNQPGFHGAGISDNQCSKPQNSFDLQPAEEVIDKVVKEAISKPWLP LPLGLNPPSTDSVLDELCKQGIISTVPCNDGSHSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	1.0	0.8795
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	2.0	0.7751
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	3.2	0.6974
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	12.6	0.6117
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10023052 [exp]	13.3	0.6524
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	13.9	0.7131
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	15.2	0.7110
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	18.5	0.6852
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	24.4	0.6681
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	26.2	0.6346

Compare expression of checked genes

Lus10003013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.