Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46310 98 / 2e-24 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT3G61630 80 / 1e-17 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G27950 78 / 7e-17 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G11140 67 / 4e-13 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G13910 66 / 5e-13 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G53290 67 / 9e-13 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G23750 66 / 2e-12 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT2G33710 64 / 2e-12 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G03800 63 / 9e-12 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G12980 63 / 1e-11 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005149 [exp] 93 / 2e-23 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10039324 [exp] 79 / 5e-17 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10027573 [exp] 78 / 2e-16 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10033664 [exp] 73 / 1e-15 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10018756 [exp] 72 / 2e-14 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10017550 [exp] 68 / 3e-13 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10035129 [exp] 64 / 3e-12 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10032353 [exp] 64 / 1e-11 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10035076 [exp] 63 / 1e-11 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167400 [exp] 116 / 3e-31 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 105 / 5e-27 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.001G094800 [exp] 91 / 2e-21 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.003G136300 [exp] 87 / 7e-20 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.015G023200 [exp] 79 / 4e-17 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.012G032900 [exp] 78 / 1e-16 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 68 / 3e-13 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.019G131300 [exp] 66 / 1e-12 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.001G069300 [exp] 63 / 1e-11 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.003G161000 [exp] 63 / 1e-11 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003037 pacid=23180833 polypeptide=Lus10003037 locus=Lus10003037.g ID=Lus10003037.BGIv1.0 annot-version=v1.0 ATGAAGAGGAATTCGAAAAATCAGAAGAGTACTCCTCCTTCCGCCGTGGGTCAGAAATATAGAGGCGTACGCCGGCGGCCGTGGGGGAGGTGGGTGGCGG AGATCAGAAATCCGGTAGAACACCGGAGGTCCTGGCTGGGGACGTTCGACACGGCGGAGGAAGCCGCGATGGTGTACGACATTGCAGCAATCAAGTTCAA AGGACACAACGCTCTCACCAACTTCGTCAATCCTCCCCCTCCGCCGGCGGTTTCGGGGTATGATTCCGAGAAAGAACCGCACAGCCGTCTCTGTTCTCCA ACGTCGGTTTTGAGCTTCCGCCACGCCGAAGAGATGGCGAGCGAGCCGACTACGGCTGAAATCCCGGAGTGGGGAAACTGGGAGGGAGCGGTTCGGAAGA AGCCGCCGCCGGCGGTGGAGGAATCCGCAGCGGAGATGGCAGAGGCGTACTTCAAGGAAAACGTGGAGTCATTCCGCGTGGAGGAACTTGTTGATTTTGA GGAGAACCCAGCTCCGAATTTCGTTGAGGATTACTACTACCATATGCCTGATAGCTTCCTGGTACAGGAAGGGGGTGATTCAGACAATTTCTGGGTGGGG ATGGAGAAAGAAGAAGATCTCGAGGCTTGTAATTGGGACGTTGACAATTACTTTGCTGTTTGA
AA sequence Show only first row Show all	>Lus10003037 pacid=23180833 polypeptide=Lus10003037 locus=Lus10003037.g ID=Lus10003037.BGIv1.0 annot-version=v1.0 MKRNSKNQKSTPPSAVGQKYRGVRRRPWGRWVAEIRNPVEHRRSWLGTFDTAEEAAMVYDIAAIKFKGHNALTNFVNPPPPPAVSGYDSEKEPHSRLCSP TSVLSFRHAEEMASEPTTAEIPEWGNWEGAVRKKPPPAVEESAAEMAEAYFKENVESFRVEELVDFEENPAPNFVEDYYYHMPDSFLVQEGGDSDNFWVG MEKEEDLEACNWDVDNYFAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	0	1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	3.2	0.8489
AT3G22520			unknown protein		Lus10000233 [exp]	8.3	0.8221
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	10.8	0.8266
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	17.0	0.7490
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	18.2	0.7973
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	19.3	0.8045
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	22.6	0.8120
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	28.0	0.7980
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	30.0	0.7725
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	30.7	0.7813

Compare expression of checked genes

Lus10003037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.