Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02450 684 / 0 cell division protein ftsH, putative (.1) AT5G15250 275 / 3e-83 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G50250 269 / 1e-80 FTSH1 FTSH protease 1 (.1) AT5G42270 267 / 5e-80 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 267 / 5e-80 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 265 / 2e-79 FTSH8 FTSH protease 8 (.1) AT3G47060 265 / 3e-78 FTSH7 FTSH protease 7 (.1) AT5G58870 264 / 6e-78 FTSH9 FTSH protease 9 (.1) AT2G26140 258 / 2e-76 FTSH4 FTSH protease 4 (.1) AT1G07510 259 / 4e-76 FTSH10 FTSH protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034097 [exp] 941 / 0 AT3G02450 713 / 0.0 cell division protein ftsH, putative (.1) Lus10012277 [exp] 271 / 1e-83 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 270 / 5e-81 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 270 / 5e-81 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 267 / 6e-80 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 267 / 5e-79 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10005868 [exp] 266 / 2e-78 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 266 / 2e-78 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10001573 [exp] 262 / 5e-77 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106500 [exp] 734 / 0 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.017G084000 [exp] 272 / 4e-82 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 271 / 2e-81 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 271 / 2e-81 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 268 / 2e-80 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.001G249100 [exp] 270 / 4e-80 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.002G220366 [exp] 253 / 9e-80 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.009G043100 [exp] 267 / 3e-79 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.014G139500 [exp] 265 / 4e-79 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 261 / 1e-77 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10003049 pacid=23154532 polypeptide=Lus10003049 locus=Lus10003049.g ID=Lus10003049.BGIv1.0 annot-version=v1.0 ATGTCCGCTTTCTCTCTGGTTTGCTCTACCGGGTCGTTCCGCACTAAAGAGAACTTGAGAATTAGTAGTGTCAAGCCGAGGACTGCGACGGGATACTCAG CTGCCTTTTCGCATTATTGGATTCCTTCTGTTCAACTTTGCAAGAAACTAGGGTCATTCTGTAGTGAGAACAATGGAGCTCGCTTGTTTGGATTTGGTCT TGGTTACCGGCGGTCTTGGCGTGGGGTTTCTTGTAGCAGCAGAATTGGGCCGTTGGTCAGCAGTAGTAACAATGGAGGCGAACCAACCGAGTTGAGAAAA AAAATTAGTAAAGCGAGGAGGAGATTTTCATTGAGACTGCGCCCTAGGTTACGGCTGTTGAGGATGATGATGAAGAGAATACGAGTTAGGTCAGCCATAA GTGATTTCATTTTGTTTCTTAAGAAGAATTTGAGAAGAAGGGAGGCACTTTATGCTTCAATCTCTATTGGATTGGCAATGTGCTACTTGTTTCTGAGACT GGCAACTGTGCCATCTTACAAGATTGTTCCTTATTCTGACTTGATAGGATCCCTGCAGAATGGTTCCGTTAGTAAAGTTTTACTCGAAGAGGGGTCTCGT CGGATATATTATAACATAGACTTTCCTGAGACCTCAAATAACCAAAACACAGAAGATCAGTCTCCTTCTGTAGCTGTAGAAGGTGTTGCCTTAGATGATC AGTCTCAAGCTATAGACGTTTCCAATGTTGTAGAAGGTGTGGCAGCTCCACAGCCATCGAGGGCTACTCAGTTGGGCAAGGTATCATTGAAACCTCGAGC ATCGAAACCTAAGTGGCAGTTTGCCACTAGGAAAATGGATCATGATGAGAAGTTTCTGCTTAGTTTGTTGAGGCAAAAGGGGACGACGTATAGCTCTGCT CCCCAATCAGTTTGGATGTCAATGAGGAGTTTGCTGTTAACTATAATAGCTTTATGGATTCCTTTAACTCCTGTGATGTGGCTTCTATACCGCCAGCTTT CGGCTGCCAATAGTCCTGCAAAGAAGCGGCGTCCAACTAATCGAACTGTCACTTTTAATGACGTGGATGGTGTTGATGCTGCTAAGGCAGAACTTATTGA GATAGTCTCGTGCCTTCAAGGAGCGATAAAATACCAAACGCTGGGGGCAAAACTGCCCAGAGGTGTGTTGTTGGTTGGTCCTCCGGGGACGGGAAAGACA TTACTGGCTCGTGCAGTAGCAGGAGAAGCTGGAGTCCCCTTTTTCAGTGTCTCCGCCAGTGAATTTGTGGAAATGTTTGTTGGAAGAGGAGCAGCACGCA TCAGAGATCTGTTTAATGCTGCCAGGAAATCTGCTCCGTCTATCATATTCATCGACGAACTTGATGCAGTTGGAGGAAGACGTGGTCGTAGCTTCAACGA TGAACGAGATCAAACACTAAATCAGGTGATAGTGGTGGTGATTGCAGCCACAAACAGGCCAGAGGCACTGGACCCTGCTCTATGTCGTCCGGGGAGATTC TCGAGAAAGGTGTTGGTAGGAGAACCAGATGAAGAAGGGAGGAGAAAGATATTAGCGATCCATTTGAGGGAAGTTCCTCTGGAAGAAGACACGGATCTTA TAGCCGATCTAGTTGCTTCTTTAACTCCAGGTCTAGTCGGTGCGGATCTTGCAAACATCGTTAACGAGGCTGCTTTACTCGCTGCCAGGAGAGGTGGTGA GAGTGTAGCAAGGGAAGATGTAATGGAAGCCATTGAAAGAGCAAAGTTTGGAATCAATGATAAGAAACTGAGGCCGAGTTCGATAAGCAAGGAGATAGGG AAGCTGTTCCCATGGGTTCTTCCATCTTTGGCGGGGAAGACACAAGGTGATTCGCAAGGGGAAGGGCCTTTAGGTTACCGGACATTGAGCTAA
AA sequence Show only first row Show all	>Lus10003049 pacid=23154532 polypeptide=Lus10003049 locus=Lus10003049.g ID=Lus10003049.BGIv1.0 annot-version=v1.0 MSAFSLVCSTGSFRTKENLRISSVKPRTATGYSAAFSHYWIPSVQLCKKLGSFCSENNGARLFGFGLGYRRSWRGVSCSSRIGPLVSSSNNGGEPTELRK KISKARRRFSLRLRPRLRLLRMMMKRIRVRSAISDFILFLKKNLRRREALYASISIGLAMCYLFLRLATVPSYKIVPYSDLIGSLQNGSVSKVLLEEGSR RIYYNIDFPETSNNQNTEDQSPSVAVEGVALDDQSQAIDVSNVVEGVAAPQPSRATQLGKVSLKPRASKPKWQFATRKMDHDEKFLLSLLRQKGTTYSSA PQSVWMSMRSLLLTIIALWIPLTPVMWLLYRQLSAANSPAKKRRPTNRTVTFNDVDGVDAAKAELIEIVSCLQGAIKYQTLGAKLPRGVLLVGPPGTGKT LLARAVAGEAGVPFFSVSASEFVEMFVGRGAARIRDLFNAARKSAPSIIFIDELDAVGGRRGRSFNDERDQTLNQVIVVVIAATNRPEALDPALCRPGRF SRKVLVGEPDEEGRRKILAIHLREVPLEEDTDLIADLVASLTPGLVGADLANIVNEAALLAARRGGESVAREDVMEAIERAKFGINDKKLRPSSISKEIG KLFPWVLPSLAGKTQGDSQGEGPLGYRTLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	0	1
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	1.0	0.9539
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	1.4	0.9415
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	8.5	0.9335
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	9.2	0.9339
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	9.7	0.8709
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	9.9	0.9362
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	11.0	0.9223
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	11.0	0.9321
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	11.2	0.9329
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	11.3	0.9347

Compare expression of checked genes

Lus10003049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.