Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80510 558 / 0 Transmembrane amino acid transporter family protein (.1) AT5G38820 274 / 6e-87 Transmembrane amino acid transporter family protein (.1) AT3G30390 274 / 6e-87 Transmembrane amino acid transporter family protein (.1.2) AT3G56200 218 / 8e-66 Transmembrane amino acid transporter family protein (.1) AT2G40420 205 / 8e-61 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034093 [exp] 783 / 0 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10007716 [exp] 291 / 2e-93 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 285 / 5e-91 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 283 / 5e-90 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 280 / 5e-89 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 279 / 2e-88 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10005099 [exp] 275 / 3e-87 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 264 / 3e-83 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10042864 [exp] 238 / 3e-73 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011900 [exp] 586 / 0 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 572 / 0 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 283 / 2e-90 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 282 / 4e-90 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 270 / 2e-85 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 245 / 8e-76 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 98 / 2e-22 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 59 / 4e-10 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003054 pacid=23154540 polypeptide=Lus10003054 locus=Lus10003054.g ID=Lus10003054.BGIv1.0 annot-version=v1.0 ATGGAGGAGACCAGGTACACAGCCGTCCCCAAGAGTTCCTATGTAGAATTGCAGTTGCACAACGACTCCGAAAACCCAGTTTCCTCCCGCAAACCCCACT CCAGATCCCTCGCCTACGAAGATTTGCACAACCCTCCCGAAGACAGAAATGCCGACGACGACGACGATCTCGATATCGATAATTTCCAATTTCCCCTCTC CAAACCCGGGACCGGCTCCGGAATCTACGGCGCGGTGTTCAACCTCACCACATCCATCATCGGCGCAGGGATCATGGCATTGCCCGCTACGATGAAGGTT CTCGGATTGCCGATAGGCGTCGTGCTCATACTCCTCATGGGGCTTTTATCAGAGGTTAGCGTTGAGCTTCTCATTAGGTTTTCGGTTCTTTGTAAGGCTT CGTCGTATGGCGAAGTTGTGGAGTGTGCTCTAGGGAGGACGGCTAAGGTATTGTCCGAGATTTGCATCATTGTGAACAATGCTGGGGTTTTGGTTGTGTA TTTGATTATTATTGGCGATGTTATGTCTGGATCTCCTCATCATGTTGGCGTTTTCGATCAATGGCTTGGAAATGGGGTGTGGGATCATAGGAGATTGGTG ATTCTCATTGTCTTGGTGCTTCTTCTTGCACCTCTCTGTGCTTTGGATCGGATCGATTCCTTGAGCTTAACTTCGGCTGCTTCGGTTGCTTTGGCCATTG TCTTCGTAGTCGTTTGCTTCACCGTTGCATTCGTCAAGTTGGTCGAAGGAAAGATCGAGCCGCCAAGGATGAGCCCTGATTTCAATTCAGAGAAGGCCAT ATTGGATTTGCTTGTGGTGATTCCCATCATGGCAAATGCATACGTTTGTCACTTCAATGTCCAGCCGATTTACAACGAGCTCGAAGGACGAACCCCTCAG AAAATGTTTAAGGTCGGGAGGATCACCACGGCTCTATGCGTTGCTGTGTATGCTTGTACTGCAATTTCAGGTTATTTGCTTTTCGGGTCAGGAACCGAAG CTGATATCCTTACCAATTTCGATGAAGACCTCGGGGTTCCTTTCAGCACTGCTTTAGATTACATAGTTAGAGTCGGCTACGTTCTGCATTTAGTTCTCGT TTTCCCTGTTCTTCATTTCTCATTGAGACAAGTTGTTAACGATCTGATCTTCGAAGGGTCGGCTCCGTTGACAGAGAGCAGGAAGAGGTGCTTGGCATTG ACAGCAGTTCTACTCGGTCTGATTTACTTTGGTTCGACTATGATTCCAAACATTTGGACGGCTTTCAAGTTTACAGGAGCAACTACTGCTGTATCTCTGG GGTTCACATTTCCATCTCTCATTGCATTGAGGCTCGGCCAACGAGGAGACGGGTTAAGCGTGAAGGAGAAGTTTTTGTCGTGGTTGATGCTGGTACTTGC TGTGATAGTTAGCGTCGCGGGAGTGATTGGAAATGTGTACAGCCTGCGAACCCATTCGGACTAA
AA sequence Show only first row Show all	>Lus10003054 pacid=23154540 polypeptide=Lus10003054 locus=Lus10003054.g ID=Lus10003054.BGIv1.0 annot-version=v1.0 MEETRYTAVPKSSYVELQLHNDSENPVSSRKPHSRSLAYEDLHNPPEDRNADDDDDLDIDNFQFPLSKPGTGSGIYGAVFNLTTSIIGAGIMALPATMKV LGLPIGVVLILLMGLLSEVSVELLIRFSVLCKASSYGEVVECALGRTAKVLSEICIIVNNAGVLVVYLIIIGDVMSGSPHHVGVFDQWLGNGVWDHRRLV ILIVLVLLLAPLCALDRIDSLSLTSAASVALAIVFVVVCFTVAFVKLVEGKIEPPRMSPDFNSEKAILDLLVVIPIMANAYVCHFNVQPIYNELEGRTPQ KMFKVGRITTALCVAVYACTAISGYLLFGSGTEADILTNFDEDLGVPFSTALDYIVRVGYVLHLVLVFPVLHFSLRQVVNDLIFEGSAPLTESRKRCLAL TAVLLGLIYFGSTMIPNIWTAFKFTGATTAVSLGFTFPSLIALRLGQRGDGLSVKEKFLSWLMLVLAVIVSVAGVIGNVYSLRTHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80510			Transmembrane amino acid trans...		Lus10003054 [exp]	0	1
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	3.2	0.9221
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	3.5	0.9050
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	4.0	0.9047
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	5.8	0.9153
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	7.3	0.9149
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	8.7	0.9079
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	8.9	0.9126
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	9.5	0.9011
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	14.7	0.9035
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	14.9	0.8850

Compare expression of checked genes

Lus10003054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.