Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 169 / 4e-46 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 119 / 4e-29 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 106 / 1e-24 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 105 / 3e-24 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46710 101 / 4e-23 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 97 / 1e-21 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G10920 96 / 3e-21 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT1G50180 95 / 6e-21 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 95 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 93 / 3e-20 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014712 [exp] 530 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 437 / 2e-145 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 417 / 4e-138 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 387 / 2e-126 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 384 / 3e-125 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 276 / 2e-84 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 200 / 6e-57 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003521 [exp] 174 / 2e-51 AT3G07040 192 / 4e-55 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 150 / 2e-39 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 192 / 4e-54 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 190 / 2e-53 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 181 / 3e-50 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 181 / 4e-50 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 181 / 4e-50 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 171 / 1e-46 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 169 / 3e-46 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 169 / 4e-46 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 169 / 7e-46 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 168 / 8e-46 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10003094 pacid=23174305 polypeptide=Lus10003094 locus=Lus10003094.g ID=Lus10003094.BGIv1.0 annot-version=v1.0 ATGAATGATGTTTGGAGAAGGATCAAAGTGGCTCTTCCAGATGGAGGCCTTCCTATTGCAATTGATTCGATTGGTCGGCTCTTGGCCAGAAAAAAACGAA CACCAAAGGAGTTGACAATGACTCTAAACAACATGCAGTGGGAGTTGAATCACGTGAGACTGCCATTGAATAGTGTCCTGCTTTTGAGCTACAATGATCT TCCATATTTCTTGAAACACTGCTTCCTATACTTTGCTCTATTCCCAGAGGACCACAAAATTTGGTGTGACAAGCTTGTTAGACTATGGATGGCCGAAGGA TTTGTGGAATCGGGTGGAAAGGGAATTAATAGACCGAAATGTGCTCCAAGCTGTGAGTTGGGATATGTACGGGATCATGGAAAGTGTAGGATGCATGATC TCTACAGAGATATTGCTCTTGAAATATCGAAGGAGGAGAATTTTTGCACAGTATATACTGTTGGGAGTAATTCCTCCAGTGAATCCAAGCATGGCCTTTG TCGTCGTGTATCCATTCACGAGGCAAGCAACGAGTCAGAGGTGATCGCATTGGTCAAAGGTATGGAACGTCTTCGATCACTATTGCTATTTTTCAAAGAA GATAATCCAGCTTTCTCATTGAGTCAACTGGGTTGGGTGGATAATCATCTCCTTCGTGTAATGGATATGGAAAATTCCCCTGTTGAAGCACTATCTGATG ATATAGAGATCTTATCTAATTTGAAATATTTAAACCTGAGTTACACTAAGATTAAGAGTGTCACAAATATTATTGAGAAGTTGCTGAGTCTTGAGACCCT TGATGTCTCATACACCGATTTCGACTCTCTTCCAAGTGACATTACCAAGTTAGAGAACCTATGCCACTTGTTAGCTGGCAGTCTAAAATTTGGAAGGCTA CTGAATTATGAAGGGTTAAAAGGGGTAAGTGTTCCATCTGGTTCAGACATTAGTTCTCTTACGAAGTTGCAGGCTCTACGGTTAGTGGAGGCAAATGAAG AGATAGTGAAGCAGCTGACAAAGATGACACAACTCGTACAACTTGGAATTACAAAGGTTGGCAAAGCTCAGATGCTAGATTTGTGCTCCGCGCTTAAGAA AATGCTACTCCTACGTTGGTTAGTTGTGATAGCAAGCACTGAGGATGAAATCCTCGAAATGAATTTCACTTGGTGA
AA sequence Show only first row Show all	>Lus10003094 pacid=23174305 polypeptide=Lus10003094 locus=Lus10003094.g ID=Lus10003094.BGIv1.0 annot-version=v1.0 MNDVWRRIKVALPDGGLPIAIDSIGRLLARKKRTPKELTMTLNNMQWELNHVRLPLNSVLLLSYNDLPYFLKHCFLYFALFPEDHKIWCDKLVRLWMAEG FVESGGKGINRPKCAPSCELGYVRDHGKCRMHDLYRDIALEISKEENFCTVYTVGSNSSSESKHGLCRRVSIHEASNESEVIALVKGMERLRSLLLFFKE DNPAFSLSQLGWVDNHLLRVMDMENSPVEALSDDIEILSNLKYLNLSYTKIKSVTNIIEKLLSLETLDVSYTDFDSLPSDITKLENLCHLLAGSLKFGRL LNYEGLKGVSVPSGSDISSLTKLQALRLVEANEEIVKQLTKMTQLVQLGITKVGKAQMLDLCSALKKMLLLRWLVVIASTEDEILEMNFTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003094 [exp]	0	1
					Lus10020633 [exp]	2.2	0.7186
					Lus10000914 [exp]	10.0	0.6376
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	12.2	0.6376
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	15.6	0.6280
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	18.4	0.6203
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	19.4	0.5816
					Lus10010602 [exp]	31.7	0.5040
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	33.2	0.4727
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	36.3	0.5938
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	37.8	0.5319

Compare expression of checked genes

Lus10003094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.