Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18460 585 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 473 / 2e-165 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT3G13510 463 / 3e-161 Protein of Unknown Function (DUF239) (.1) AT1G55360 456 / 1e-158 Protein of Unknown Function (DUF239) (.1) AT1G10750 446 / 4e-154 Protein of Unknown Function (DUF239) (.1) AT5G50150 442 / 5e-153 Protein of Unknown Function (DUF239) (.1) AT1G23340 439 / 4e-152 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 436 / 9e-151 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 435 / 2e-150 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 381 / 2e-129 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004766 [exp] 800 / 0 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 471 / 2e-164 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 451 / 1e-155 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 448 / 2e-154 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 416 / 2e-142 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 396 / 1e-135 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 395 / 8e-135 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 382 / 4e-130 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 379 / 7e-129 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050100 [exp] 651 / 0 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 649 / 0 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 470 / 4e-164 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 468 / 5e-163 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 467 / 8e-163 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 446 / 4e-154 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 444 / 3e-153 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 431 / 1e-148 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 429 / 3e-147 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 235 / 2e-72 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10003100 pacid=23165947 polypeptide=Lus10003100 locus=Lus10003100.g ID=Lus10003100.BGIv1.0 annot-version=v1.0 ATGGGTTGCTACTGCCGCTCGTCATTGGTTATATTAGAAGCAGCAGCAACGTCATGTCAAACAAGGTCAACGACAAAGCTCCTTCTTTTTCTTCTTCTTC TGACGGCGGCGGTTGCCGGCGGCGGAAGTGGGTTGAATATCTCGTCATCGGAGTATAATAGACAAGTGAGCAGTTTGAGACTTGGTAGGATTCATAGGCA CTTGAACAGGATCAACAAACCCTCTGTTCTCACCATTCAGAGTCCAGATGGGGATATTATAGACTGTGTTCATAAGAAAAAGCAGCCTGCTCTGGACCAT CCCCTGCTCCTCAACCATAAGCTTCAGAGAGCGCCATCACAAATGCCAAAGGTGAAAAAAGGCGCCGTGGCGGAGAAGCAAACACAAAAGGACGGCGGCG GTGACGGCGGAGATGAGACTATTGCGTGGCAAATGTGGCACCGGAACGGGACACGATGCCCGAAGGGAACTGTCCCGATACGGCGGAGCTCGGTCAACGA CGTCCTGAGGGCCAAATCTTTGTTTCACTTTGGGAAGAAACAGAGACGATTGCCTTCTCCGCTCTCTCGCCGCCGTGATGCCCCCGACGTCGTCAGCGGC AACGGTCACGAGCATGCGATAGCGTACACGGGAGCGTCGGAGGAGGTGTATGGAGCCAAGGCCACCATAAACGTGTGGGACCCATCGATCCAAGTGGTCA ACGAGTTCAGCCTCTCGCAGATCTGGGTACTCTCGGGATCTTTCGACGGCTCAGATCTCAACAGCATCGAAGCTGGGTGGCAGGTCAGTCCGGAGCTCTA TGGAGATAGCAGGCCAAGACTCTTCACTTATTGGACCATTAGAGTAAGATATCCATTTGCAAAGGAAAACATTGATGAGCATACAGATGTGGTCCTCTGG TTCTTTGTTGTTAGGAGTGATTCTTATCAAGCTACGGGATGCTACAACCTACTATGCTCAGGATTCGTACAAACCAATAGTAGGATTGCGATCGGAGCTG CCATCTCTCCCGTTTCTTCCTTCTCCGGCAGTCAATACGACATCTCCATCCTAATCTGGAAGGACCCGAAAATCGGAAACTGGTGGATGAGCTTTGGGGA CAGCACGCTAGTCGGGTACTGGCCTGCGGAGCTATTTACCCACCTAGCCGACCGGGCCACCATGGTGGAGTGGGGCGGGGAGGTGGTGAACTCGCGAGCC AATGGCCTACACACTTCCACAGAAATGGGCTCGGGCCATTTCGCTAAAGACGGGTTCCGTAAGGCCAGCTATTTCAGGAACCTGGAAGTCGTGGACTCGG ACAATAGTCTCACGTCGGCCAAGGACATTTACACCTTAGCCGAGAACACAAACTGTTACGACATCAAGAGTGGCTACAATGGTGAATGGGGCACGTACTT CTACTATGGCGGACCTGGCCGGAATCCGGCGTGCCAGTGA
AA sequence Show only first row Show all	>Lus10003100 pacid=23165947 polypeptide=Lus10003100 locus=Lus10003100.g ID=Lus10003100.BGIv1.0 annot-version=v1.0 MGCYCRSSLVILEAAATSCQTRSTTKLLLFLLLLTAAVAGGGSGLNISSSEYNRQVSSLRLGRIHRHLNRINKPSVLTIQSPDGDIIDCVHKKKQPALDH PLLLNHKLQRAPSQMPKVKKGAVAEKQTQKDGGGDGGDETIAWQMWHRNGTRCPKGTVPIRRSSVNDVLRAKSLFHFGKKQRRLPSPLSRRRDAPDVVSG NGHEHAIAYTGASEEVYGAKATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTIRVRYPFAKENIDEHTDVVLW FFVVRSDSYQATGCYNLLCSGFVQTNSRIAIGAAISPVSSFSGSQYDISILIWKDPKIGNWWMSFGDSTLVGYWPAELFTHLADRATMVEWGGEVVNSRA NGLHTSTEMGSGHFAKDGFRKASYFRNLEVVDSDNSLTSAKDIYTLAENTNCYDIKSGYNGEWGTYFYYGGPGRNPACQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	0	1
AT1G68585			unknown protein		Lus10021686 [exp]	4.9	0.9541
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	6.4	0.9605
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	8.2	0.9074
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	8.5	0.9561
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	10.9	0.9483
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015316 [exp]	11.4	0.9090
AT2G47010			unknown protein		Lus10007453 [exp]	11.8	0.9514
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	17.5	0.9399
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	17.6	0.9490
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	19.6	0.9484

Compare expression of checked genes

Lus10003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.