Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24050 464 / 3e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 407 / 6e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 310 / 2e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37540 262 / 4e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 251 / 1e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 246 / 8e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 244 / 3e-79 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 243 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 95 / 6e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 93 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017308 [exp] 578 / 0 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042088 [exp] 317 / 7e-107 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018092 [exp] 259 / 3e-84 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024415 [exp] 254 / 1e-82 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 253 / 3e-82 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 243 / 1e-78 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 243 / 1e-78 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 243 / 3e-78 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 240 / 2e-77 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086900 [exp] 465 / 2e-165 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 428 / 7e-151 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 315 / 1e-106 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 315 / 1e-106 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 315 / 1e-106 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G083900 [exp] 263 / 2e-86 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 252 / 4e-82 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 242 / 2e-78 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 237 / 3e-76 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 233 / 8e-75 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003204 pacid=23155743 polypeptide=Lus10003204 locus=Lus10003204.g ID=Lus10003204.BGIv1.0 annot-version=v1.0 ATGCTGCAAACAGTCAAATACTTGATCGGCGCACGCGGAGCCAGCGGCTACGGCTCCAAATCCACGGCAGAGGAAGTCACGGAAAACTGCAGCGATCTCC GCTCCGTCACCGCCATCATCACCGGAGCGACGTCGGGGATCGGTGCGGAGACCGCCAGAGTGCTGGCGAAGAGAGGCGCGACGGTGGTGATTCCGGTGAG GAGCATGAAAGCGGCAGAGGATACGAAGGCGCGGATATTGTCAGAGTGTCCTGATGCTGCGATCATCGTTATGGCGCTCGATCTCAGCTCGCTCCGATCC GTCAGAAGCTTCGTCTCCGAGTTCGAATCGCTCGATTTGCCCCTCAATCTCCTCATAAATAACGCCGGGAAATTCGCGCACCAGCATGCGATATCGGAGG ATGGAATCGAGATGTCGTTCGCCACTAACTACCTAGGCCATTTTCTGCTGACGAATCTGTTACTGGAGAAGATGAAGGAAACAGCGGAGGAAACGGGAGT GCAGGGGAGAATAGTGAACGTGTCATCGGCGATTCACGGGTGGTTCGCTGGCGATATGCTGCAGTACCTGGAAGAGATTTCTGGGCAGAAATGTCCTCAT TACGATGCTACACGTGCATACGCTCTCTCCAAGCTTGCTAACGTCCTCCATACCAAACACCTTGCTCTGAAGCTCAAGGAAACGGATGCCAACGTAACAG TCAACTGCGTACACCCCGGAATCGTCCGGACGAGGCTGACGAGAGAAAGAGAAGGGTTCGCAACAGACGCAGCCTTCTTCTTAGCATCAAAACTCTTAAA AACAATCCCGCAGGCAGCCGCGACGACTCTCTATGTAGCGACCCATCCAAGGGTGGGGAATGCATCGGGGAAGTACTTTGCGGATTGCAACGAAGCAGGA GTGTCCAAATTGGGATCCAGCTCAAGAGAAGCCGCTCGGCTATGGTCCGCATCCGAAACCATGGTTTCTTCTGCGTCGTCCACGAACTCAAAAGCATCAG CTTTTCATGCACTTTTGCTTTAG
AA sequence Show only first row Show all	>Lus10003204 pacid=23155743 polypeptide=Lus10003204 locus=Lus10003204.g ID=Lus10003204.BGIv1.0 annot-version=v1.0 MLQTVKYLIGARGASGYGSKSTAEEVTENCSDLRSVTAIITGATSGIGAETARVLAKRGATVVIPVRSMKAAEDTKARILSECPDAAIIVMALDLSSLRS VRSFVSEFESLDLPLNLLINNAGKFAHQHAISEDGIEMSFATNYLGHFLLTNLLLEKMKETAEETGVQGRIVNVSSAIHGWFAGDMLQYLEEISGQKCPH YDATRAYALSKLANVLHTKHLALKLKETDANVTVNCVHPGIVRTRLTREREGFATDAAFFLASKLLKTIPQAAATTLYVATHPRVGNASGKYFADCNEAG VSKLGSSSREAARLWSASETMVSSASSTNSKASAFHALLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	4.1	0.7330
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	4.6	0.7246
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	5.5	0.7030
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	9.0	0.7066
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	9.5	0.6869
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	10.6	0.7278
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	10.6	0.7231
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	10.9	0.6779
AT3G12150			unknown protein		Lus10021026 [exp]	12.0	0.6798
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	21.0	0.6972

Compare expression of checked genes

Lus10003204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.