Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18193 130 / 2e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 126 / 4e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 129 / 5e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 129 / 6e-35 BCS1 cytochrome BC1 synthesis (.1) AT2G18190 126 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 122 / 3e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 122 / 1e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 122 / 1e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 108 / 1e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 108 / 1e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003213 [exp] 176 / 3e-52 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 125 / 1e-33 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 122 / 4e-33 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10041777 [exp] 117 / 4e-33 AT5G17760 243 / 8e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015802 [exp] 123 / 5e-33 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 123 / 6e-33 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 123 / 7e-33 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 120 / 5e-32 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10031318 [exp] 117 / 1e-30 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119900 [exp] 142 / 4e-40 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 140 / 6e-39 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 130 / 1e-35 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 129 / 3e-35 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 129 / 4e-35 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 127 / 8e-35 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119066 [exp] 122 / 2e-32 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 122 / 2e-32 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.008G177200 [exp] 121 / 4e-32 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 120 / 4e-32 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10003212 pacid=23155761 polypeptide=Lus10003212 locus=Lus10003212.g ID=Lus10003212.BGIv1.0 annot-version=v1.0 ATGCTCAAGATTCACACCATTGACGGCAACGGAGGTTACGGACCTGGCGACAAATGGAAGTCCGTCAATTTGGATCACCCTTCGACCTTCGACACTCTGG CTATGGAGCCGTCGCTGAAGAAGTCGATCGTCGAAGATCTGGATAGGTTTCGGGGGAGGAAAGAGTACTACAAGCGAGTCGGCCGGGCCTGGAAGCGTGG CTATTTGCTTTACGGGCCACCGGGGACGGGGAAATCGATTCTGATTGCTGGCATGGCGAACTACTTGAAGTTCAACTCACCGCCATTCGTAGCGATTCGG AGCTCCGAATGGCTAATAGGTCGATTCTCGTCATCTAGGATATCGATTGTAGCTGCGAATTTCCCGATCGGAATAACGACATCATGGTTGTGTGCCGAAA TCGGAGAGTTCACCGACGAGGAGGATGCTAAGCTCATCCCCGCTAAAGCGACGGAGAAGCTCATGGAGAATAAAGATCCTGACGTGGCTTTGGATGGTCT TTTGAATTTGCTGAAGAAGAAGAAGAAGAAGGAGGATGAGAAGAAGAAGAAGAAGAAGGGATTAGTTGTGGCAGCAAACAACGAAGAAGAAGAAGTATAC TTCGACTTGGACTGA
AA sequence Show only first row Show all	>Lus10003212 pacid=23155761 polypeptide=Lus10003212 locus=Lus10003212.g ID=Lus10003212.BGIv1.0 annot-version=v1.0 MLKIHTIDGNGGYGPGDKWKSVNLDHPSTFDTLAMEPSLKKSIVEDLDRFRGRKEYYKRVGRAWKRGYLLYGPPGTGKSILIAGMANYLKFNSPPFVAIR SSEWLIGRFSSSRISIVAANFPIGITTSWLCAEIGEFTDEEDAKLIPAKATEKLMENKDPDVALDGLLNLLKKKKKKEDEKKKKKKGLVVAANNEEEEVY FDLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10003212 [exp]	0	1

Compare expression of checked genes

Lus10003212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.