Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17740 417 / 7e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 412 / 2e-138 BCS1 cytochrome BC1 synthesis (.1) AT5G17760 405 / 9e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50940 391 / 8e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 391 / 2e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 387 / 7e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 358 / 7e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 354 / 4e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 323 / 5e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 322 / 2e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014284 [exp] 400 / 6e-135 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 395 / 4e-133 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 385 / 2e-129 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 353 / 4e-116 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 341 / 3e-113 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 342 / 8e-112 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031318 [exp] 333 / 3e-108 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 319 / 4e-102 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 311 / 6e-100 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020800 [exp] 442 / 6e-151 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G119900 [exp] 439 / 5e-150 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 424 / 3e-144 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 409 / 3e-138 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 404 / 6e-137 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 400 / 1e-134 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 360 / 9e-120 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 361 / 5e-119 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 355 / 1e-116 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 350 / 7e-116 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10003213 pacid=23155748 polypeptide=Lus10003213 locus=Lus10003213.g ID=Lus10003213.BGIv1.0 annot-version=v1.0 ATGCCTTGCCCTACAAGGAAACACCTTCAACCCCCGCCCCCCTCTCTCCTTGTCAAACATTATATAACACTCTTCAATCGTTGCTCTTCAGCAGTTCGGC TCCGCTGTAAAATCCTCGATCCTCTTGAATATATGCGGGGAATGACGATGAACAGGATGTTCGATTTCAGCAGTCCATCATCAACCTTCAACTCCTTAAT GAACATGAATTCAACGCTGATGCTATTCAAAACGCTGGTCAACACACTCATCCCCCGCCACGCCCAACTCTGGCTCTACGACACCCTCCGCCGCCTGTTC CGCATCCGATTCACCGACGACCTAACCATAGCCGTCAAGGAATACACCGGCGGCAGCTCTCTCTACTCCCGCAACCAAGTCTACGACGCTGCAGAGATCT ACCTCCCAACCAAAATCACCTCCAGAAACAACCACATCTGCATCAGCAAATCCTCCAAGGACAAGAACATCACCGTCGCGTTCGAGGACGGCCAAGTCAT CTACGACGAATTCCGCGGCGTCGATCTCAAGTGGAGCTTCTCCAAAAGCAAGCAGCCATCTAAGCGTCATCACGATTACGAATACGAAACCGATCAAACC AGCGGCAAATCGGAGAAATCGTTCCTATTGAAATTCGGTAGCAAGGAAAAGGATCTGATCCTGGAGTTGTACATACCTTACATGATCGAGACGGCGAATC AGATGAGAGCAGGGGAGAGAGTGCTCAAGATTCACACCATTGACGGCAACGGAATTTACAGACACGCCGATAAATGGAAGTCTGTCAATTTGGATCATCC TTCGAGCTTCGACACTCTGGCTATGGAGCCGTCGCTGAAGAAGTCGATCATCGAAGATCTCGATAGGTTTCGGGGGAGGAAAGACTACTACAAGCGAGTC GGCCGTGCCTGGAAACGTGGCTATTTACTTTACGGCCCACCGGGAACAGGGAAATCGAGTCTAATTGCTGCCATGGCGAATTACTTGAAATTCGACATCT ACGATCTCCAACTCACCATGGTAAAAAACGATTCGGAGCTCCGAATGGCGTTGCTCGCGACCGATAACCGGTCGATTCTCGTCATTGAGGATATCGATTG CAGCTACGAATTGCCCGATAGGAATAACCCCGAGGTAACTGTCACGCGAGAATCAAATGGGAAGACCGACGAAAAGATAACACTGGCTGGATTGCTGAAT TTCATCGACGGATTATGGTCGAGTTGTGGGGACGAGAGGGTTATAGTGTTCACGACGAACCACAAGGAGAGACTCGACCCCGCCCTATTGAGGCCGGGTC GGATGGACATGCATGTCCACTTGTCGTACTGCACGAAGCGAGTGTTCGAACAGCTGGCCGCGAATTACTTGGGAGCAGATGTCGAGAATCATAGGTTGTG TGCCGAAATCGGAGAGTTGATCGACGAGCAGGATGCTAAGGTCACCCCTGCTAGTGTGACGGAGAAGCTTATGGAGAGCGAAAATGCTGACGTGGCGTTG GATGGTCTTTTGAATTTGTTGAAGGAGAAGAAGGAGGGATCAGTTGTGGAAGCAAACGATGAAGATTACATAAAGACAGAGATAGAAGAAGGCTGA
AA sequence Show only first row Show all	>Lus10003213 pacid=23155748 polypeptide=Lus10003213 locus=Lus10003213.g ID=Lus10003213.BGIv1.0 annot-version=v1.0 MPCPTRKHLQPPPPSLLVKHYITLFNRCSSAVRLRCKILDPLEYMRGMTMNRMFDFSSPSSTFNSLMNMNSTLMLFKTLVNTLIPRHAQLWLYDTLRRLF RIRFTDDLTIAVKEYTGGSSLYSRNQVYDAAEIYLPTKITSRNNHICISKSSKDKNITVAFEDGQVIYDEFRGVDLKWSFSKSKQPSKRHHDYEYETDQT SGKSEKSFLLKFGSKEKDLILELYIPYMIETANQMRAGERVLKIHTIDGNGIYRHADKWKSVNLDHPSSFDTLAMEPSLKKSIIEDLDRFRGRKDYYKRV GRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLTMVKNDSELRMALLATDNRSILVIEDIDCSYELPDRNNPEVTVTRESNGKTDEKITLAGLLN FIDGLWSSCGDERVIVFTTNHKERLDPALLRPGRMDMHVHLSYCTKRVFEQLAANYLGADVENHRLCAEIGELIDEQDAKVTPASVTEKLMESENADVAL DGLLNLLKEKKEGSVVEANDEDYIKTEIEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	0	1
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	1.4	0.9828
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	3.7	0.9769
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	6.5	0.9737
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	7.7	0.9709
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	8.0	0.9724
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	8.7	0.9654
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10037575 [exp]	8.9	0.9393
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	10.2	0.9744
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	10.5	0.9757
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	10.5	0.9607

Compare expression of checked genes

Lus10003213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.