Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31830 663 / 0 Amino acid permease family protein (.1.2) AT5G05630 631 / 0 Amino acid permease family protein (.1) AT1G31820 606 / 0 Amino acid permease family protein (.1) AT3G19553 498 / 2e-174 Amino acid permease family protein (.1) AT3G13620 408 / 5e-139 Amino acid permease family protein (.1) AT3G03720 44 / 0.0002 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 42 / 0.0009 CAT2 cationic amino acid transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012153 [exp] 674 / 0 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 671 / 0 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10009849 [exp] 503 / 3e-176 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10040966 [exp] 502 / 7e-176 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10039180 [exp] 415 / 1e-141 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 382 / 7e-129 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 379 / 1e-127 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10013757 [exp] 262 / 3e-08 AT3G13620 536 / 0.0 Amino acid permease family protein (.1) Lus10013638 [exp] 50 / 3e-06 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103600 [exp] 679 / 0 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 675 / 0 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.001G296100 [exp] 489 / 1e-170 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 478 / 7e-166 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 417 / 7e-143 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 416 / 3e-142 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.019G039700 [exp] 52 / 6e-07 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.013G065000 [exp] 47 / 2e-05 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 44 / 0.0002 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.001G150700 [exp] 44 / 0.0003 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10003232 pacid=23182540 polypeptide=Lus10003232 locus=Lus10003232.g ID=Lus10003232.BGIv1.0 annot-version=v1.0 ATGCAGAAGCAAAAGGTGTTGGCTTTTTTCATGGATTCCAACCATACTGAGTATGCAGCAATTGGTGAACCGCCATCTTCGCCAAAGCACGATAAATATC GCAAAGTCTCAATCCTTCCGCTCGTCTTTCTGATCTTCTATGAAGTATCGGGAGGACCATTCGGTGTCGAAGACAGCGTTCGAGCAGCCGGGCCACTTCT AGCACTTCTTGGGTTCGTGATCTTCCCGTTCGTGTGGAGCATTCCCGAGGCTCTAATCACAGCAGAACTCAGCACGATGTTCCCCGAAAATGGTGGCTAT GTCGTCTGGGTTTCCTCGGCTCTCGGCCCGTTCTGGGGGTTCCAACAAGGTTGGATGAAATGGCTGAGTGGTGTCATTGACAATGCACTATACCCTGTTC TGTTTCTAGACTACCTGAAACCAGCCGTTCCAGCTCTCGATGATGGCTTCGTTCGAATGGTCGCAGTTCTGGTTCTGACTTTCTTGCTTACTCTGTTGAA CTATAGAGGATTAACCATTGTTGGATGGGCTGCTATACTGTTGGGAGTGATGTCTCTCATTCCGTTTCTTCTGATGGGAATCATAGCGATTCCGAAACTA GAGGCTTCGAGATGGGTTGCCATTGATATGAGCAATGTGAACTGGACACTTTACTTAAACACACTGTTCTGGAATCTCAACTATTGGGATTCTATCAGTA CACTAGCAGGAGAAGTTGAAAACCCTGGTAAAACCCTACCCAAGTCACTCTTCTACGCACTGATCTTAACTGTTTTCAGCTACTTTCTCCCCCTATTAAT CGGAACTGGAGCAATCCCACTTGACCGGAACCAATGGAGAGACGGTTACTTCTCGGAGATTGCCACCATCATCGGAGGCGCTTGGCTGATGTACTGGGTA CAAGCAGCTTCAGCTGTATCAAACATGGGGATGTTCATTGCTGAAATGAGCAGCGACTCGTTCCAACTCCTGGGAATGGCGGAGCGAGGCATGCTACCTC GATTCTTTAGCAAGAGGTCTCGGTATGGAACCCCTGTGATAGGGATCCTGTTCTCGGCCTCCGGGGTGGTGTTGCTCTCGTGGATGAGTTTTCAGGAGAT CGTTGCAGCGGAGAACTTCCTCTACTGTTTCGGTATGATCATGGAGTTCATCGCATTCGTTAAGCTTAGGGTGGATTACCCTGATGCGACGAGGCCTTAC AAGGTTCCCTTGGGGACGGTTGGAGCTGTTGTTATGTGCATTATTCCGAGCTTGCTGTTGGTGGTGGTCTTGGTTATTGCTCCGATTAAGGTCATGGCCG TTAGCTTTGCAGCCATTGCTATTGGCCTTGTTATGCAGCCTTGTCTTCTATATGCTGAGAAGAAACTTTGGCTTAGATTCTCAAGGAACTCTCAACTTAC TGACCTTCATTCTAGCTTGACATCAGTGTAA
AA sequence Show only first row Show all	>Lus10003232 pacid=23182540 polypeptide=Lus10003232 locus=Lus10003232.g ID=Lus10003232.BGIv1.0 annot-version=v1.0 MQKQKVLAFFMDSNHTEYAAIGEPPSSPKHDKYRKVSILPLVFLIFYEVSGGPFGVEDSVRAAGPLLALLGFVIFPFVWSIPEALITAELSTMFPENGGY VVWVSSALGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLKPAVPALDDGFVRMVAVLVLTFLLTLLNYRGLTIVGWAAILLGVMSLIPFLLMGIIAIPKL EASRWVAIDMSNVNWTLYLNTLFWNLNYWDSISTLAGEVENPGKTLPKSLFYALILTVFSYFLPLLIGTGAIPLDRNQWRDGYFSEIATIIGGAWLMYWV QAASAVSNMGMFIAEMSSDSFQLLGMAERGMLPRFFSKRSRYGTPVIGILFSASGVVLLSWMSFQEIVAAENFLYCFGMIMEFIAFVKLRVDYPDATRPY KVPLGTVGAVVMCIIPSLLLVVVLVIAPIKVMAVSFAAIAIGLVMQPCLLYAEKKLWLRFSRNSQLTDLHSSLTSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	0	1
					Lus10029579 [exp]	4.7	0.8091
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	6.3	0.7841
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	6.3	0.7818
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	6.5	0.7387
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	6.7	0.7894
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	7.5	0.7947
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	8.9	0.7521
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	15.1	0.7637
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	19.1	0.7424
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	19.2	0.7480

Compare expression of checked genes

Lus10003232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.