Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39730 751 / 0 RCA rubisco activase (.1.2.3) AT1G73110 335 / 3e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002710 [exp] 768 / 0 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10000518 [exp] 765 / 0 AT2G39730 790 / 0.0 rubisco activase (.1.2.3) Lus10004708 [exp] 696 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10040275 [exp] 694 / 0 AT2G39730 730 / 0.0 rubisco activase (.1.2.3) Lus10010868 [exp] 688 / 0 AT2G39730 642 / 0.0 rubisco activase (.1.2.3) Lus10035616 [exp] 433 / 1e-151 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3) Lus10041627 [exp] 337 / 7e-112 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058500 [exp] 779 / 0 AT2G39730 803 / 0.0 rubisco activase (.1.2.3) Potri.010G200500 [exp] 777 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.016G101100 [exp] 699 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.001G037300 [exp] 340 / 3e-113 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G187601 [exp] 41 / 0.0001 AT1G73110 78 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10003234 pacid=23182510 polypeptide=Lus10003234 locus=Lus10003234.g ID=Lus10003234.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTCTGCCACCACACTCTCCAACTTGAGAGCAATTCATATGAACAGATCAGCAAACCTAAAACGTCCAAGCTCCAAGTTCTCCAAGCCGT CGCCGTCGGGAAGTTTCAGGGCTGCGGCAGAGTACGACGAGAAGAAGCAGACGGAGAAAGACAGATGGAAGGGTTTGGTCTCCGACATGTCAGACGACCA GCAGGACATTACTAGAGGGAAAGGAATGGTGGATTCCCTCTTCCAAGCTCCCATGGGGACAGGCACCCACCACCCTATTATGTCTTCCTACGACTACATC AGCCAGGGCCTTCGCCAGTATGATTTGGATAATAGTATGGATGGCCTATACATTGCTCCTGCGTTTATGGACAAGGTTGTGGTTCACATCACCAAGAACT TCTTGTCCCTTCCTAACATTAAGGTTCCATTAATCTTGGGTATTTGGGGAGGCAAAGGCCAAGGGAAATCCTTCCAATGTGAGCTCGTTTTCAAGAAAAT GGGAATCAACCCAATCATGATGAGTGCAGGGGAACTGGAAAGCGGCAACGCAGGGGAGCCAGCGAAACTAATCAGACAACGGTACAGAGAAGCCGCCGAC ATCATCCGAAAGGGCAAAATGTGCTGCCTCTTCATCAACGATCTGGACGCAGGAGCTGGGAGGATGGGTGGGACGACGCAGTACACGGTCAACAACCAGA TGGTCAACGCAACCCTCATGAACATCGCTGACAACCCGACGAATGTCCAGCTTCCGGGGCAGTACAACAAGGAAGAGAATCCTCGAGTTCCGATCATCGT CACGGGGAATGACTTCTCCACGTTGTACGCTCCGTTGATTCGGGACGGGCGTATGGAGAAGTTCTACTGGGCGCCTACCAGGGAGGACAGGATTGGAGTG TGCAGTGGGATCTTCAGGACTGATAATGTCCCTTTGGGGGACATTGTTAGGCTCGTTGATACGTTTCCTGGCCAGTCCATTGATTTCTTTGGGGCTCTGA GGGCCAGAGTATACGACGACGAAGTAAGGAAGTGGCTTGGCGGAATTGGGGTGGAGAATGTCGGGAGAAGACTAGTGAACTCCAAGGAAGCACCTCCGAC GTTCGAGCAGCCCAAGATGACGGTGGCGAAGCTGCTGGAGTACGGCAACATGCTGGTGAAGGAGCAGGAGAATGTTAAGAGAGTTCAGTTGGCTGACAAG TATCTGAAAGAAGCAGCTCTAGGTGACGCAAATCAGGATTCCATCAACAATGGAAGTTTCTACGGGAAAGCAGCTCAGCAAGTCAACCTCCCTCTCCCGG AGGGCTGCACCGATCCTTCGGCGAAGAACTTTGATCCGACGGCTAGGAGTGACGACGGAAGCTGCGTTTATCAGTTTTAA
AA sequence Show only first row Show all	>Lus10003234 pacid=23182510 polypeptide=Lus10003234 locus=Lus10003234.g ID=Lus10003234.BGIv1.0 annot-version=v1.0 MAAASATTLSNLRAIHMNRSANLKRPSSKFSKPSPSGSFRAAAEYDEKKQTEKDRWKGLVSDMSDDQQDITRGKGMVDSLFQAPMGTGTHHPIMSSYDYI SQGLRQYDLDNSMDGLYIAPAFMDKVVVHITKNFLSLPNIKVPLILGIWGGKGQGKSFQCELVFKKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD IIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV CSGIFRTDNVPLGDIVRLVDTFPGQSIDFFGALRARVYDDEVRKWLGGIGVENVGRRLVNSKEAPPTFEQPKMTVAKLLEYGNMLVKEQENVKRVQLADK YLKEAALGDANQDSINNGSFYGKAAQQVNLPLPEGCTDPSAKNFDPTARSDDGSCVYQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	1.0	0.9441
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	2.0	0.8767
					Lus10027052 [exp]	3.2	0.8264
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	5.5	0.8608
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	6.6	0.8663
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	7.1	0.8666
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	7.9	0.8425
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	8.8	0.8591
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	8.9	0.7867
AT5G19340			unknown protein		Lus10010529 [exp]	9.5	0.8317

Compare expression of checked genes

Lus10003234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.