Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 157 / 2e-47 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 146 / 1e-44 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 145 / 7e-43 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 144 / 3e-42 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT1G22640 133 / 8e-38 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 129 / 5e-36 MYB AtMYB4 myb domain protein 4 (.1) AT4G09460 127 / 6e-36 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G40330 127 / 6e-36 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G35550 127 / 1e-35 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G14750 125 / 2e-35 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042522 [exp] 196 / 2e-62 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10028513 [exp] 164 / 2e-49 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10009130 [exp] 164 / 2e-49 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10006541 [exp] 150 / 8e-47 AT1G66370 118 / 7e-35 myb domain protein 113 (.1) Lus10028514 [exp] 151 / 9e-45 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 148 / 3e-43 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10000470 [exp] 139 / 1e-39 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 135 / 3e-38 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000411 [exp] 130 / 1e-36 AT4G09460 300 / 5e-103 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 163 / 2e-49 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125600 [exp] 161 / 1e-48 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125900 [exp] 159 / 7e-48 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125800 [exp] 158 / 2e-47 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 150 / 5e-44 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.003G079100 [exp] 135 / 1e-39 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.006G221200 [exp] 133 / 2e-38 AT3G13540 169 / 6e-53 myb domain protein 5 (.1) Potri.017G128900 [exp] 133 / 4e-38 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.004G088100 [exp] 131 / 2e-37 AT4G09460 227 / 5e-75 myb domain protein 6 (.1) Potri.003G064600 [exp] 130 / 2e-37 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003277 pacid=23147834 polypeptide=Lus10003277 locus=Lus10003277.g ID=Lus10003277.BGIv1.0 annot-version=v1.0 ATGGGAGGAGTGGCTTGGACTGAAGAAGAAGATCACTTGCTCCGAAAATGCATCGAGCAGTACGGCGAAGGCAAATGGCACCGTGTCCCCTTGTTGGCTG GTCTAAATAGGTGCCGTAAGAGTTGTAGGTTGAGGTGGCTGAACTACCTGCGGCCGAATATAAGGAGGGGGAGTTTCGGAGATGAGGAAGTTGAACTCAT CATTAAGCTTCATAAACTATGGTCGTTGATCGCCGGAAGGCTTTCAGGAAGAACAGCTAACGATGTGAAGAACTACTGGAATTGCCACCTCAGCAAACGC CTCACTCCAGCCACTTCCCAAGACCAAGCTGCCGCCGCCGACGATCAGGACGTCACTAAACTCCAGCTCACCTCCTCCGTTGTCGCCGCCGCCACCCCAA CTGAGATAATGAGGTCCTACCCAAGTAACAACATCATCAACTACGGCCAGCAAGGGATCATCCTCCAAGAAGAGTACAGCTGCACAACGTCGACAGCCAG AGCCACACCACCGCCGCCACAGCTACCGCTGCCGCCGGTGTTGTTTGCGGAGGACGGCAGCAGCAGTAGCAGCAACTGGGTTCTTAACGGTGGTATTAAG GAGCATGAAGGGCCGGCGGGGTTTCCGGGCGGCGGCGGTGAGGAGATGATCGGAATGGAGCATCAGTTCAGGTTCGAGAGCTGCAGTAGCGCCAAGTGGG ATTGGGATGACTTGATTGGTGACTTGGACCGTTGGGGCGAGTGA
AA sequence Show only first row Show all	>Lus10003277 pacid=23147834 polypeptide=Lus10003277 locus=Lus10003277.g ID=Lus10003277.BGIv1.0 annot-version=v1.0 MGGVAWTEEEDHLLRKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIRRGSFGDEEVELIIKLHKLWSLIAGRLSGRTANDVKNYWNCHLSKR LTPATSQDQAAAADDQDVTKLQLTSSVVAAATPTEIMRSYPSNNIINYGQQGIILQEEYSCTTSTARATPPPPQLPLPPVLFAEDGSSSSSNWVLNGGIK EHEGPAGFPGGGGEEMIGMEHQFRFESCSSAKWDWDDLIGDLDRWGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	0	1
					Lus10001326 [exp]	2.2	1.0000
					Lus10026755 [exp]	3.5	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	3.9	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	4.9	1.0000
AT1G32250			Calcium-binding EF-hand family...		Lus10019055 [exp]	4.9	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	5.5	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	8.5	1.0000
					Lus10022894 [exp]	8.9	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	11.0	1.0000
					Lus10025806 [exp]	13.5	1.0000

Compare expression of checked genes

Lus10003277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.