Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 597 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 468 / 8e-157 SULTR4;2 sulfate transporter 4;2 (.1.2) AT3G51895 215 / 6e-61 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 206 / 1e-57 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT4G08620 204 / 5e-57 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 195 / 2e-53 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 194 / 2e-53 SULTR3;5 sulfate transporter 3;5 (.1) AT1G22150 194 / 3e-53 SULTR1;3 sulfate transporter 1;3 (.1) AT1G23090 186 / 2e-50 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 177 / 2e-47 SULTR3;4 sulfate transporter 3;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030321 [exp] 1006 / 0 AT5G13550 830 / 0.0 sulfate transporter 4.1 (.1) Lus10023440 [exp] 592 / 0 AT5G13550 955 / 0.0 sulfate transporter 4.1 (.1) Lus10040319 [exp] 585 / 0 AT5G13550 962 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 223 / 1e-63 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 221 / 1e-62 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 207 / 1e-57 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10039364 [exp] 202 / 2e-55 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10006612 [exp] 201 / 2e-55 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10035896 [exp] 196 / 8e-54 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049500 [exp] 561 / 0 AT5G13550 921 / 0.0 sulfate transporter 4.1 (.1) Potri.010G211400 [exp] 548 / 0 AT5G13550 898 / 0.0 sulfate transporter 4.1 (.1) Potri.005G167300 [exp] 227 / 4e-65 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 209 / 8e-59 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 204 / 7e-57 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 204 / 7e-57 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 201 / 1e-55 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 195 / 1e-53 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 193 / 5e-53 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 184 / 7e-50 AT1G23090 998 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10003294 pacid=23169876 polypeptide=Lus10003294 locus=Lus10003294.g ID=Lus10003294.BGIv1.0 annot-version=v1.0 ATGGCAAACATATATGGAGCTAAGGAAAATAGCGTTCCTCCTGCTACTGGTTGTGAGGATATGTGTCCCATTAAGGGCTGTGCTGGAATGGAAGCAATCC AGCTGGCTAAGTTTACCCATGAAGAGAAGCTAATTACGCCAGCGCAAACCGACGTCGTCTCATCTTCCACGATGCCAGACACCGCCGTCTCCCGACCTGT GAAGATCATTCCTCTTCAGCACCCCTCCGTCGGCACCACCACCACCTCCTCCTCTTCTTCCACTTCTCCGACCACTTTCTTTTCCGGTCTGCTCACCAAA TGGAAACGCCTCACCTTCCTCCAATGCATCGAGTACCTCTTCCCTTGTTCCCGCTGGATTCGAACCTACAGATGGCGCGAAGATTTTCAGGTCGATCTCG TCTCCGGTCTCACCATCGGCGTCATGCTTGTCCCCCAGGCCATGTCATATGCAAAATTAGCAGGGCTTGAACCAATTTATGGACTGTATACTGGCTTTGT CCCAATCTTTGTCTACGCCGTATTTGGATCATCACGGCAACTGGCGATTGGCCCAGTTGCCCTGGTTTCTCTGCTGGTATCTAATGTTCTGAGGGGGATT GCTGGTTCTTCCGATGAGCTGTACACTGAGCTTGCGATTGTATTGGCTCTTATGGTTGGAATACTGGAATGCATTATGGGACTTCTGAGGCTAGGATGGC TTTTACGATTCATCAGCCACTCTGTTATATCTGGCTTTACAACTGCTTCAGCTTTTGTTATTGGGCTATCGCAAGCAAAGTATTTTTTGGGATACAATAT CACACAAAGTAGCAAAATTGTGCCACTGATTAAGAGCATAATAGCTGGAGCAGACAAGTTCTCATGGCCTCCTTTTGTGATGGGATCTGGCATCCTTGCT GTACTCCTTATTATGAAGCACTTGGAATCTGTGGGGATTGCCAAAGCCTTGGCTGCAAAGAATGGATATGAACTCGATTCAAGTCAGGAGTTGGTTGGTC TTGGTTTAGCAAATATCTTCGGCTCTTTCTGCTCTTCATATCCCTCAACAGGTTCCTTTTCCAGGTCAGCTGTTAGCAATGAGAGTGGGGCAAAAACCGG TTTGTCTGGGATCATTACTGGAATTGTCATGGGCTGTGCTCTTTTATTCTTGACTCCATTATTTGAGTTCATACCACAGTGTGCGCTGGCTGCAATAGTT GTTTCTGCCGTAATTGGCTTGGTTGAATATAAGGAGGCAATCTTCTTGTGGCGTGTTGATAAGAAAGACTTTCTTCTTTGGATCATTACGTGCACCATGA CTTTGTTCCTTGGGATCGAGATTGGTGTTCTTGTTGGGGTAGGTGTCTCACTTGCCTTTGTCATCCATGAATCTGCAAATCCGCATATTGCTGTCTTAGG TCGACTTCCTGGCACTACTGTTTATAGAAATATTGAACAATACCCGGAAGCATACACTTACCATGGAATTGTCATTGTTCGCATCGATGCTCCTATCTAC TTTGCAAATACAAGCTTTATAAAAGACAGACTGCGAGATTATGAAGTTAGTGTAGATACATCAGCCCGTCGTGGGCCAGAAGTCGAAAGGATATACTTTG TGATTTTAGAGATGTCCCCTGTCACGTACATAGACTCCAGTGCCATCCAAGCTCTGAAAGACTTGCACCAAGAGTACAAGTCGCGGGATATCCAGATAGC TATTTCAAATCCAAACCGCGAAGTTCTACTGACACTCTCAAAAGCTGGCATTGTGGAACTCATCGGCAAGGAATGGTACTTTGTAAGAGTACATGATGCA GTCCAGATATGCCTTCAGCACGTCCAGAGCTTGCACCAAACTCCCGAGACCACATTAGCTGAAACCAAACCCAATTTGCTAGAACGGTTGTTAAAACAAA GAGGAGACGATTCATCGGTGTCTGACTTAGAATCTGGACAGAGAAATGTGGTTGCTTCCAGGAACAACGATCCTAATTTGGAGCCATTGTTGTCCCCCCA TAGATTCAATCCTTGA
AA sequence Show only first row Show all	>Lus10003294 pacid=23169876 polypeptide=Lus10003294 locus=Lus10003294.g ID=Lus10003294.BGIv1.0 annot-version=v1.0 MANIYGAKENSVPPATGCEDMCPIKGCAGMEAIQLAKFTHEEKLITPAQTDVVSSSTMPDTAVSRPVKIIPLQHPSVGTTTTSSSSSTSPTTFFSGLLTK WKRLTFLQCIEYLFPCSRWIRTYRWREDFQVDLVSGLTIGVMLVPQAMSYAKLAGLEPIYGLYTGFVPIFVYAVFGSSRQLAIGPVALVSLLVSNVLRGI AGSSDELYTELAIVLALMVGILECIMGLLRLGWLLRFISHSVISGFTTASAFVIGLSQAKYFLGYNITQSSKIVPLIKSIIAGADKFSWPPFVMGSGILA VLLIMKHLESVGIAKALAAKNGYELDSSQELVGLGLANIFGSFCSSYPSTGSFSRSAVSNESGAKTGLSGIITGIVMGCALLFLTPLFEFIPQCALAAIV VSAVIGLVEYKEAIFLWRVDKKDFLLWIITCTMTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNIEQYPEAYTYHGIVIVRIDAPIY FANTSFIKDRLRDYEVSVDTSARRGPEVERIYFVILEMSPVTYIDSSAIQALKDLHQEYKSRDIQIAISNPNREVLLTLSKAGIVELIGKEWYFVRVHDA VQICLQHVQSLHQTPETTLAETKPNLLERLLKQRGDDSSVSDLESGQRNVVASRNNDPNLEPLLSPHRFNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10003294 [exp]	0	1
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10030321 [exp]	12.1	0.8928
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10032587 [exp]	140.8	0.8079

Compare expression of checked genes

Lus10003294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.