Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 520 / 0 Transmembrane amino acid transporter family protein (.1) AT4G35180 352 / 2e-116 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 259 / 6e-81 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 253 / 2e-78 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 247 / 6e-76 Transmembrane amino acid transporter family protein (.1) AT3G01760 246 / 2e-75 Transmembrane amino acid transporter family protein (.1) AT1G67640 241 / 1e-73 Transmembrane amino acid transporter family protein (.1) AT1G48640 237 / 4e-72 Transmembrane amino acid transporter family protein (.1) AT1G25530 226 / 4e-68 Transmembrane amino acid transporter family protein (.1) AT1G71680 186 / 5e-53 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025113 [exp] 805 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 802 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 535 / 0 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 530 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 526 / 0 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 451 / 2e-154 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 394 / 4e-132 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 389 / 1e-130 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 258 / 4e-80 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181200 [exp] 673 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 654 / 0 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 612 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 527 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 482 / 1e-166 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 455 / 5e-157 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 256 / 2e-79 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 244 / 7e-75 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 238 / 1e-72 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 234 / 3e-71 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003338 pacid=23148033 polypeptide=Lus10003338 locus=Lus10003338.g ID=Lus10003338.BGIv1.0 annot-version=v1.0 ATGGGCAACCAGGATGGCAACGTGCACTACGACGACGACGAGTTTTTAACCGGGTCCAACCCAATGACCCCACGCCCGCCGATATCCGCACCACCGTCGC AATTCCACTCGCCGTCGATGTCGAGGTCGCCGCTCCTCCAGACTCCCGATCGTGTTGTGACGCTCCCACCGAGCGCCAACAGGACCCCAAGAGGCGGGGG CACGCCAAGAACAGGACGTGCCACGCCCAGGACCTCGTGGACCCCACGGTTCATAACCCCGTTGGGTTCCCCATTGAGGAAGGCGCTCCACCTCACGAAG TTGGACCCCAACGACGCGTGGCTACCCATCACCGAGTCAAGGAACGGGAACGCATTCTACGCAGCGTTTCACTGTCTCTGCTCCGGGATCGGGATCCAGG CTCTCGTCCTCCCCGTTGCCTTCACCGTTCTGGGTTGGACATGGGGAATCATATGCTTAGCATTTGCATTCACATGGCAACTCTATACTCTTTACATCCT CGTTCAGCTCCACGAATCCGTCGAAACGGGCATTCGTTACAGTCGATATCTTCAACTCGCTAGCGCAGCCTTCGGTGAAAGGTTATCAAACATATTGGCG ATGGTCCCAATAATGAACCTGTCGGGCGGAACTTGCACGGCTCTGATCATCATAGGCGGATCCACTTCGAAGCTTTTGTTCCAGACATTATGTGGGGCCA CGTGCTCAGCGAATCAGCATGCACCGACTACCGTAGAGTGGTACTTGATTTTCACATTCGCAGTAGCCATACTGTCCCAGCTTCCTAACTTGAACTCGAT CGCCGGCGTCTCGTTAATCGGATCGATCACGGCTATAGGGTACTGTACATTGATATGGGTTGTGTCGGTAGCCGAAGGAAGGGTTCCCGGGGTTTCGTAT AACCCGGTGAGTTCCGGTACGGATCTCGAGAGGGCTTTTGCAGTTCTGAATGCGCTTGGCATCGTCGCTTTTGCCTTCAGAGGACACAATCTCGTGCTCG AAATTCAGGCCACAATGCCTTCAAGTGAAAAGCACCCATCAACGGTACCAATGTGGAAAGGAGTCAAAGTTGCCTATGCCCTAATTGCCATTTGCCTTTT TCCTCTAGCAATTGGAGGCTATTGGGCTTATGGTCAATTGATCCCAGCGGGAGGGATGTTGACCGCGCTATTCGCGTTCCACGGGAAAGACACGTCAAAA TTCATCCTAGGCCTGACCAGCTTCTTCGTGGTGGTGAACGCACTAAGCTCGTTCCAGCTCTACGCAATGCCGATATTCGACCAGATGGAGTCGTCGGTGG TGACCAAGACGAAGAAGGCCTGCCCCCGGTGGCTCAGATCAGCGATGCGCGTCTTCTTCGCGTTCGTGTGCTTCTTCATTGCAGTCGCGATACCCTTCCT GGGGAGCGTGGCGGGCCTCATCGGAGGGATCTCACTCCCCGTGACATTGGCTTACCCTTGCTTCATGTGGCTTAAGGTGAAGAAGCCGGCCCAGTATAGT TGGATGTGGTTGGTGAATTGGGGGCTTGGAGTTTTTGGGTTGCTCTTGAGTGGGGCTTTGATTGTGGCTGGAGTTTATGTTGTGGTTGATAATGGGATTG AGTTCAACTTCTTCAAGCCCCAATAG
AA sequence Show only first row Show all	>Lus10003338 pacid=23148033 polypeptide=Lus10003338 locus=Lus10003338.g ID=Lus10003338.BGIv1.0 annot-version=v1.0 MGNQDGNVHYDDDEFLTGSNPMTPRPPISAPPSQFHSPSMSRSPLLQTPDRVVTLPPSANRTPRGGGTPRTGRATPRTSWTPRFITPLGSPLRKALHLTK LDPNDAWLPITESRNGNAFYAAFHCLCSGIGIQALVLPVAFTVLGWTWGIICLAFAFTWQLYTLYILVQLHESVETGIRYSRYLQLASAAFGERLSNILA MVPIMNLSGGTCTALIIIGGSTSKLLFQTLCGATCSANQHAPTTVEWYLIFTFAVAILSQLPNLNSIAGVSLIGSITAIGYCTLIWVVSVAEGRVPGVSY NPVSSGTDLERAFAVLNALGIVAFAFRGHNLVLEIQATMPSSEKHPSTVPMWKGVKVAYALIAICLFPLAIGGYWAYGQLIPAGGMLTALFAFHGKDTSK FILGLTSFFVVVNALSSFQLYAMPIFDQMESSVVTKTKKACPRWLRSAMRVFFAFVCFFIAVAIPFLGSVAGLIGGISLPVTLAYPCFMWLKVKKPAQYS WMWLVNWGLGVFGLLLSGALIVAGVYVVVDNGIEFNFFKPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	0	1
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	2.0	0.9905
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	2.4	0.9897
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	2.4	0.9904
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	3.2	0.9853
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	4.9	0.9863
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	5.3	0.9841
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	6.0	0.9888
AT1G63810			unknown protein		Lus10014305 [exp]	6.6	0.9763
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	6.6	0.9816
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	8.4	0.9872

Compare expression of checked genes

Lus10003338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.